View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_7 (Length: 434)
Name: NF8541_low_7
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 39129776 - 39130195
Alignment:
| Q |
15 |
agcaaattacattgcaattgcaacaacaaacaattaactaacatggctttcacaatttcatattttttcctagccttcttgttatttcccttccaatgtt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39129776 |
agcaaattacattgcaattgcaacaacaaacaattaactaacatggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgtt |
39129875 |
T |
|
| Q |
115 |
catcttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39129876 |
catcttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggctt |
39129975 |
T |
|
| Q |
215 |
ctttcaagttggtgaaaatgctttttcctttggaatatggttcactgaactgcagcctcacactcacaaccccgccactattgtttggacagcaaaccgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39129976 |
ctttcaagttggtgaaaatgctttttcctttggaatatggttcactgaactgcagcctcacactcacaaccctgccactattgtttggacagcaaaccgt |
39130075 |
T |
|
| Q |
315 |
gacaaccctgtaaatggtatgttaaaatttatgcaaattttatagtattatacacttgcttaatataatttggttatagtgataaagatggtgttgggac |
414 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39130076 |
gacaaccctgtaaatggtatgttaaaatctatgcaaattttatagtattatacacttgcttaatataatttggttatagtgataaagatggtgttgggag |
39130175 |
T |
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| Q |
415 |
agctggcaacatgactctct |
434 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39130176 |
agctggcaacatgactctct |
39130195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 39120043 - 39120462
Alignment:
| Q |
15 |
agcaaattacattgcaattgcaacaacaaacaattaactaacatggctttcacaatttcatattttttcctagccttcttgttatttcccttccaatgtt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39120043 |
agcaaattacattgcaattgcaacaacaaacaattaactaacatggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgtt |
39120142 |
T |
|
| Q |
115 |
catcttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39120143 |
catcttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggctt |
39120242 |
T |
|
| Q |
215 |
ctttcaagttggtgaaaatgctttttcctttggaatatggttcactgaactgcagcctcacactcacaaccccgccactattgtttggacagcaaaccgt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39120243 |
ctttcaagttggtgaaaatgctttttcctttggaatatggttcactgaactgcagcctcacactcacaaccccgccactattgtttggatagcaaaccgt |
39120342 |
T |
|
| Q |
315 |
gacaaccctgtaaatggtatgttaaaatttatgcaaattttatagtattatacacttgcttaatataatttggttatagtgataaagatggtgttgggac |
414 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
39120343 |
gacaaccctgtaaatggtatgttaaaatctatgcaaattttatagtattctacaattgcttaatataatttatttatagtgacaaagatggtgttgggag |
39120442 |
T |
|
| Q |
415 |
agctggcaacatgactctct |
434 |
Q |
| |
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|| |||||||||||| |||| |
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| T |
39120443 |
agttggcaacatgacactct |
39120462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 52 - 358
Target Start/End: Complemental strand, 21120193 - 21119883
Alignment:
| Q |
52 |
ctaacatggctttcacaatttcatattttttcctagccttcttgttatttcccttccaat---gttcatcttcattatcatcattgaacaaagggtcctc |
148 |
Q |
| |
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|||||||| |||||||||| |||||| |||| ||| ||| ||| ||||||||||||||| |||||||||| ||||||| |||||||| || || || |
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| T |
21120193 |
ctaacatgactttcacaatatcatatatttttttagtcttgttgctatttcccttccaatattgttcatcttctgtatcatctttgaacaagggatcttc |
21120094 |
T |
|
| Q |
149 |
tctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctttcaagttggtgaaaatgctttttcctttgga |
248 |
Q |
| |
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||| || |||||||| || | |||||||||||||| ||||||||||| | ||||| ||||| || | |||| |||||||||||||||||||||| | |
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| T |
21120093 |
tctctctgtagagaaacatacagaagatgtaattgtctcttcaaatggcactttctctgctggtttttatcaaattggtgaaaatgctttttccttcgcc |
21119994 |
T |
|
| Q |
249 |
atatggttcactgaactgcagcctcacactcacaaccccgccactattgtttggacagcaaaccgtgacaaccctgtaaatggt-atgttaaaatttatg |
347 |
Q |
| |
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||||||||||| || |||||| ||| | ||||||||||| || ||||||||||| ||||||||||| | || || |||||| ||||||||||| ||| |
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| T |
21119993 |
atatggttcaccgagctgcagaatcaaagtcacaaccccgtcaatattgtttggatggcaaaccgtgaacaaccggtgaatggtaatgttaaaattcatg |
21119894 |
T |
|
| Q |
348 |
caaattttata |
358 |
Q |
| |
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|||||||||| |
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| T |
21119893 |
taaattttata |
21119883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 23 - 353
Target Start/End: Complemental strand, 21132930 - 21132597
Alignment:
| Q |
23 |
acattgcaattgcaacaacaaacaattaactaa---catggctttcacaatttcatattttttcctagccttcttgttatttcccttccaatgttcatct |
119 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||| ||||| ||||||| || |||||||| |||||| ||||||||||||||||||||||| |
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| T |
21132930 |
acattgcaattgcaagaacaat-aattaactaataacatggttttcaaaatttcacatattttcctaatcttctttctatttcccttccaatgttcatct |
21132832 |
T |
|
| Q |
120 |
tcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctttc |
219 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| ||||||||||| |||| ||||||||||||||||||||||| |||| ||||| ||||| |||| || |
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| T |
21132831 |
catttatcatctttgaaaaaaggctcttctctctcagtagagaaacatgcagaagatgtaattgtttcttcaaagggaactttctctgctggattctatc |
21132732 |
T |
|
| Q |
220 |
aagttggtgaaaatgctttttcctttggaatatggttcactgaactgcagcctcacactcacaaccccgccactattgtttggacagcaaaccgtgacaa |
319 |
Q |
| |
|
| ||||| | || ||||| || | ||||||||||| || ||||| ||| |||| ||||||||||| ||||||||||| ||||||||||| | |
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|
| T |
21132731 |
aggttggcaataacagcttttcattcgccatatggttcacagagatgcagaatcaaactcccaaccccgccaatattgtttggatggcaaaccgtgaaca |
21132632 |
T |
|
| Q |
320 |
ccctgtaaatggt-atgttaaaatttatgcaaatt |
353 |
Q |
| |
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||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
21132631 |
acctgtgaatggtaatgttaaaattcatgcaaatt |
21132597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 21127607 - 21127370
Alignment:
| Q |
21 |
ttacattgcaattgcaacaacaaacaattaactaa---catggctttcacaatttcatattttttcctagccttcttgttatttcccttccaatgttcat |
117 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||||| ||||| ||||||| || |||||||| |||||| |||||||||| |||||||||| |
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|
| T |
21127607 |
ttacattgcaattgcaagaacaat-aattaactaataacatggttttcaaaatttcacatattttcctaatcttctttctatttccctttcaatgttcat |
21127509 |
T |
|
| Q |
118 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctt |
217 |
Q |
| |
|
|| |||||||| ||||| || || || ||||| ||||||||||| |||| |||||||||| |||||||||||| |||| ||||| ||||| |||| |
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| T |
21127508 |
ctcatttatcatctttgaaaaagggctcttctctctcagtagagaaacatgcagaagatgtaactgtttcttcaaagggaactttctctgctggattcta |
21127409 |
T |
|
| Q |
218 |
tcaagttggtgaaaatgctttttcctttggaatatggtt |
256 |
Q |
| |
|
|||||||||||||||| | |||||||| | ||||||||| |
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|
| T |
21127408 |
tcaagttggtgaaaataccttttccttcgcaatatggtt |
21127370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 18662041 - 18661701
Alignment:
| Q |
21 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagccttcttgttatttcccttccaatgttcat |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| | |||||| |||||||||| || |||| ||| | | ||| ||||||||||||||||||| | |
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|
| T |
18662041 |
ttacattgcaattgcaacaacaat-aattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcct |
18661943 |
T |
|
| Q |
118 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctt |
217 |
Q |
| |
|
| || ||||||| |||| ||||| |||||||| ||||||||||| || | |||||||||||||| |||||||| || | ||||| |||||||||| |
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|
| T |
18661942 |
cctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttcta |
18661843 |
T |
|
| Q |
218 |
tcaagttggtgaaaatgctttttcctttggaatatggttcactgaactgcagcctcacactcacaaccccgccactattgtttggacagcaaaccgtgac |
317 |
Q |
| |
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|||| |||| || || || ||||| || | ||||||||||| ||| || | ||| | || | |||| |||| ||||||||||| ||||||||||| |
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| T |
18661842 |
tcaaattggcgacaacgcattttcattcgccatatggttcacagaaatgacgaatcaaagtcccgacccagccaatattgtttggatggcaaaccgtgaa |
18661743 |
T |
|
| Q |
318 |
aaccctgtaaatggt-----atgttaaaatttatgcaaattt |
354 |
Q |
| |
|
| |||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
18661742 |
caacctgtaaacggtacgtaatgttaaaattcatgcaaattt |
18661701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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