View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_high_3 (Length: 443)
Name: NF8542_high_3
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 41160514 - 41160925
Alignment:
| Q |
11 |
catagacccaacatgaacgctgacaaaactaacattttacacagtcggctttagtagaagtaagataagaactagatatgaaggtaattaagttagtatc |
110 |
Q |
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| T |
41160514 |
catagacccaacatgaacgctgacaaaactaacattttacacagtcagctttagtagaagtaagataagaactagatatgaaggtaa----gttagtatc |
41160609 |
T |
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| Q |
111 |
gaatggtgaaacgacgatctctaagtttgagttcaacgataacaagctgatttgttgttctcacaggagttccacatagttcatttcattactcaagcat |
210 |
Q |
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| T |
41160610 |
gaatggtgaaacgacgatctctaagtttgagttcaacgataacaagctgatt-gttgttctcacaggagttccacatagttcatttcattactcaagcat |
41160708 |
T |
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| Q |
211 |
cttatatttaacttggtagtttttatagtagaaaaa--ttctcttgaaaagcaaaaatttgttcacaattttattaccaacatccactggcatcgataga |
308 |
Q |
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| T |
41160709 |
cttatatttaacttggtagtttttatagtagaaaaaaatcctcttgaaaagcaaaaatttgttcacaattttattaccaacatccactggcatcgataga |
41160808 |
T |
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| Q |
309 |
gatcagatgtgaccaagaattgaaactgggaaagtggaagagatatcttcacagtttttcttttatccagcgggtgttcactctagtggagatcgtttct |
408 |
Q |
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| T |
41160809 |
gatcagatgtgaccaagaattgaaactgggaaagtggaagagatattttcacagtttttcttttatccagcgggtgttcactctaatggagatcgtttct |
41160908 |
T |
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| Q |
409 |
catggccaagaaccggt |
425 |
Q |
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| T |
41160909 |
catggccaagaaccggt |
41160925 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 32656515 - 32656578
Alignment:
| Q |
352 |
tatcttcacagtttttcttttatccagcgggtgttcactctagtggagatcgtttctcatggcca |
416 |
Q |
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| T |
32656515 |
tatcttcacagttttcctttaatccggcgg-tggtcactctagtggaaatcatttctcatggcca |
32656578 |
T |
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