View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8542_high_7 (Length: 256)

Name: NF8542_high_7
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8542_high_7
NF8542_high_7
[»] chr5 (2 HSPs)
chr5 (1-256)||(31379264-31379519)
chr5 (4-256)||(31330482-31330734)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 31379519 - 31379264
Alignment:
Q  1 ccgccgttctccataagatttgttttctcctcaaggtcttcgataggttctttgttcagaatgtttgtcatgaagttgggattcaccagcaccaattgag 100  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31379519 ccgccgttcaccataagatttgttttctcctcaaggtctttgataggttctttgttcagcatgtttgtcatgaagttgggattcaccagcaccaattgag 31379420  T
Q  101 agtgttcatannnnnnngcatgccctaaaggaatttgaatgaactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatact 200  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31379419 agtgttcatatttttttgcatgccctaaaggaatttgaatgaactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatact 31379320  T
Q  201 gccaatatctgtactactgatcaccaattgttgtgaatccatgctattgatagcac 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31379319 gccaatatctgtactactgatcaccaattgttgtgaatccatgctattgatagcac 31379264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 256
Target Start/End: Complemental strand, 31330734 - 31330482
Alignment:
Q  4 ccgttctccataagatttgttttctcctcaaggtcttcgataggttctttgttcagaatgtttgtcatgaagttgggattcaccagcaccaattgagagt 103  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31330734 ccgttcaccataagatttgttttctcctcaaggtctttgataggttctttgttcagcatgtttgtcatgaagttgggattcaccagcaccaattgagagt 31330635  T
Q  104 gttcatannnnnnngcatgccctaaaggaatttgaatgaactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgcc 203  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330634 gttcatatttttttgcatgccctaaaggaatttgaatgaactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgcc 31330535  T
Q  204 aatatctgtactactgatcaccaattgttgtgaatccatgctattgatagcac 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330534 aatatctgtactactgatcaccaattgttgtgaatccatgctattgatagcac 31330482  T

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