View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_low_1 (Length: 577)
Name: NF8542_low_1
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 2 - 559
Target Start/End: Original strand, 32099085 - 32099642
Alignment:
| Q |
2 |
atcgtggtctagtggttgttcttgatgatcttttgaatatgtgagtactggaggatcatggtgattgaatggttgctgcacttttacgttgtcggggtag |
101 |
Q |
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| T |
32099085 |
atcgtggtctagtggttgttcttgatgatcttttgaatctgtgagtgctggaggatcatggtgattgaatggttgctgcacttttacgttgtcggggtag |
32099184 |
T |
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| Q |
102 |
aaggcaattggattagaggcggtgaagttgatggtggtgttggcaaagaggatgattgtgacacaaataagcaaggcaaagagggtgaaaatgaagggaa |
201 |
Q |
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| T |
32099185 |
aaggcaattggattagaggcggtgaagttgatggtggtgttggcaaagaggatgattgtgacacaaataagcaaggcaaagagggtgaaaatgaatggaa |
32099284 |
T |
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| Q |
202 |
actttctgtctttgtagaatgtttcaacaaaatttgtcattcttgatttgatacaactagagaaagaaagagaggcttgtgcttttacaaaggaagaaat |
301 |
Q |
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| T |
32099285 |
actttctgtctttgtagaatgtttcaacaaaatttgtcattcttgatttgatacaactagagaaagaaagagaggattgtgcttttacaaaggaagaaat |
32099384 |
T |
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| Q |
302 |
tagcatgcagatcaaagattgtttttatacatttatagaattgaaatatttggatctcactgatctcatattttccaacacatatatgttagtgaagtta |
401 |
Q |
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| T |
32099385 |
tagcatgcagatcaaagattgtttttatacatttatagaattgaaatatttggatctcactgatctcatattttccaacacatatatgttagtgaagtta |
32099484 |
T |
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| Q |
402 |
gaaaagggagacagaaggttacgctagtcgctaattggaattgttcaaggcaacacatttgataaattatatttgacagctttcaataaactactatata |
501 |
Q |
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| T |
32099485 |
gaaaagggagacagaaggttacgctagtcgctaataggaattgttcaaggcaacacatttgataaattatatttgacagctttcaataaactactatata |
32099584 |
T |
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| Q |
502 |
ttctgcatggctgccactatgttgggaaaatactacatttgattgccggagccatagt |
559 |
Q |
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| T |
32099585 |
ttctgcatggctgccactatgttgggaaaatactacatctgattgccggagccatagt |
32099642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 32099028 - 32099081
Alignment:
| Q |
2 |
atcgtggtctagtggttgttcttgatgatcttttgaatatgtgagtactggagg |
55 |
Q |
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|||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
32099028 |
atcgtggtgtagtggttcttcttgatgatcttttgaatctgtgagtactggagg |
32099081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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