View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_low_11 (Length: 242)
Name: NF8542_low_11
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 34483850 - 34483638
Alignment:
| Q |
19 |
aaacatcccaaggccggtgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactg |
118 |
Q |
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|||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34483850 |
aaacattccaaggtcggtgcttgaaattattcttaatgtggcacgaataacagagttcacatacgaaaactttgaggataaatacacaaaagcagaactg |
34483751 |
T |
|
| Q |
119 |
atgaaagattacattgttgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggcta---ttactg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
34483750 |
atgaaagattacattgttgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagtggctacttttactg |
34483651 |
T |
|
| Q |
216 |
ctttatgcatctc |
228 |
Q |
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|||||||||||| |
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| T |
34483650 |
ttttatgcatctc |
34483638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 34448485 - 34448294
Alignment:
| Q |
20 |
aacatcccaaggccggtgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactga |
119 |
Q |
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||||||||||| || ||||||||| ||||| | | |||||| ||| | || || || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
34448485 |
aacatcccaagaccagtgcttgaatttattatgaatgtggcgcgagtgactgagtttgcatacgaaaactttgaggataaatacacaaaaccagaactgc |
34448386 |
T |
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| Q |
120 |
tgaaagattacattgttgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggctatt |
211 |
Q |
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| T |
34448385 |
taaaagattacattgttgcactacttgtggatcctataagcatcgagctaagtgagtagaagaagcaagatcagttataataagtggctatt |
34448294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 34459717 - 34459527
Alignment:
| Q |
21 |
acatcccaaggccggtgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgat |
120 |
Q |
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|||| |||||||| ||||||||| |||||||| | | || ||| ||| | |||| ||||||| |||||||||||||||||||||| |||| ||| | |
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| T |
34459717 |
acattccaaggccagtgcttgaatgtattcttaattttgcgcgaggaactcacttcatatacgaagactttgaggataaatacacaaatccagatctgct |
34459618 |
T |
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| Q |
121 |
gaaagattacattgttgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggctatt |
211 |
Q |
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| T |
34459617 |
caaagattacattgctgcactgcttgtagatcctataagcatcgagcaatgcgagtagaagaagcaagatcagttataataagtggctatt |
34459527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 34473742 - 34473618
Alignment:
| Q |
35 |
gtgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattg |
134 |
Q |
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||||||||| |||||||| ||||||||||||||| || ||||| |||||||||| ||||||||||||||||| | |||||| ||||||| || ||| |
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| T |
34473742 |
gtgcttgaatgtattcttaatgtggcacgaataaccgagttcacctacgaaaactacgaggataaatacacaaatggggaactgttgaaagactatgttg |
34473643 |
T |
|
| Q |
135 |
ttgcactacttatagatcctataag |
159 |
Q |
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||||||| || |||||||| ||||| |
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| T |
34473642 |
ttgcacttctcatagatccaataag |
34473618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 6132314 - 6132428
Alignment:
| Q |
22 |
catcccaaggccggtgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatg |
121 |
Q |
| |
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||||||||| || ||| | |||| |||| ||| |||||| ||| || | || ||||||||||||||||||||||||||||||||||| | ||| || || |
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| T |
6132314 |
catcccaagcccagtggtcgaaagtattgttaatgtggcgcgagtagccgagttcacatacgaaaactttgaggataaatacacaaatggggaattgctg |
6132413 |
T |
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| Q |
122 |
aaagattacattgtt |
136 |
Q |
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||||| ||||||||| |
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| T |
6132414 |
aaagactacattgtt |
6132428 |
T |
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