View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_low_12 (Length: 232)
Name: NF8542_low_12
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 27 - 212
Target Start/End: Original strand, 29228325 - 29228508
Alignment:
| Q |
27 |
gtcatcactcccaatcattcctccaattcatcaaactaactaagatcctatcattaacatctaattacttcgcaaaaatggcgatgataattacaatgac |
126 |
Q |
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| T |
29228325 |
gtcatcactcccaatcattcctccaattcatcaaactcactaagatcctatcattaacatctaattacttcgcaaaaatggcgatgataattacaatgac |
29228424 |
T |
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| Q |
127 |
gaatgaataatcaaacaaattaaacacacaaacacgcaattaaactaacaaacacatcaatttgcaatcacctgataacacgaaac |
212 |
Q |
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| T |
29228425 |
gaatgaataatcaaacaaattaaacacacaaacacgcaattaaactaacaaacac--caatttgcaatcacctgataacacgaaac |
29228508 |
T |
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