View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_low_2 (Length: 449)
Name: NF8542_low_2
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 44799132 - 44798760
Alignment:
| Q |
1 |
atgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacccaaacacgaaccatt |
100 |
Q |
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| T |
44799132 |
atgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacccaaacacgaaccatt |
44799033 |
T |
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| Q |
101 |
ttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaagcaaaagaaacaacac |
200 |
Q |
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| T |
44799032 |
ttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaagcaaaagaaacaacac |
44798933 |
T |
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| Q |
201 |
tgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaacttgtatcaaattcaaccgcaaagtaagaatcttgatcagaatg |
300 |
Q |
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| T |
44798932 |
tgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaactcgtatcaaattcaaccgcaaagtaagaatcttgatcagaatg |
44798833 |
T |
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| Q |
301 |
aggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcg |
373 |
Q |
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| T |
44798832 |
aggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcg |
44798760 |
T |
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