View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_low_4 (Length: 388)
Name: NF8542_low_4
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 41697188 - 41697561
Alignment:
| Q |
16 |
tgtgtgtgtgggataaaacaagacttgtattttctgaaaaacttacctgattaatatgtaggtgacgatacatgtttgcatggaagaaaggtgtttctcc |
115 |
Q |
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| T |
41697188 |
tgtgtgtgggggataaaacaagacttgtattttctgaaaaacttacctgattaatatgtaggtgacggtacatgtttgcatggaagaaaggcgtttctcc |
41697287 |
T |
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| Q |
116 |
aacctcgtgaattgaaattcgctttttggatgcagtttcaacattaacaatcctacgagtacttatttcaattaggttataagaatgccccactgaaatt |
215 |
Q |
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| T |
41697288 |
aacctcgtgaattgaaattcgctttttggatgcagtttcaacattaacaatcctacgagtacttatttcaattaggttataagaatgccccactgaaatt |
41697387 |
T |
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| Q |
216 |
tctgatgaacgaatcctctgtcaaaacaagagcataacatattataaacattaaattcataagagttcattaaaattt-aaaaaatgcaaaggctctaaa |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41697388 |
tctgatgaacgaatcctctgttaaaacaagagcataacatattataaacattaaattcataagagttcattaaaatttaaaaaaatgcaaaggctctaaa |
41697487 |
T |
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| Q |
315 |
atcaaacatttatagcatcgtcaatgccagtggcttcaagaatgcctcgcgaaatgaagttgcgcccaatccca |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697488 |
atcaaacatttatagcatcgtcaatgccagtggcttcaagaatgcctcgcgaaatgaagttgcgcccaatccca |
41697561 |
T |
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