View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_low_6 (Length: 369)
Name: NF8542_low_6
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 4613083 - 4612768
Alignment:
| Q |
18 |
actccttcacacttcagtttccacgcacttccttaacgcgtgggttcacgcggtaaaaactttgattttcttcatttatttatcaattatttctttctct |
117 |
Q |
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| T |
4613083 |
actccttcacacttcagtttccacgcacttccttaacgcgtgggttcacgcggtaaaaactttgattttgttcatttatttatcaattatttctttcttt |
4612984 |
T |
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| Q |
118 |
ttgttcattttaaaaatatacaacatttgattgatatgcaggggtnnnnnnnntttagttatatctccgaacttaaccagagattttaagttcaaactta |
217 |
Q |
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| T |
4612983 |
ttgttcatcttaaaaatatacaacatttgattgatatgcaggggtaaaaaaaatttagatatatctccgaacttaacctgagattctaagttcaaactta |
4612884 |
T |
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| Q |
218 |
actttgagaatacatcaatattaaattttttgacataattttaccaacatattgtgattcagtttgatttgtaagattaatctctattgttgtgtgtaga |
317 |
Q |
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||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| ||| |
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| T |
4612883 |
actttgagaatacatgaatgttaaactttttgacataattttaccaacatattgtggttcagtttgatttgtaagactaatctctattattgtgtacaga |
4612784 |
T |
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| Q |
318 |
ggatattagattcaca |
333 |
Q |
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||||||||| |||||| |
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| T |
4612783 |
ggatattaggttcaca |
4612768 |
T |
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