View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_low_7 (Length: 353)
Name: NF8542_low_7
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 3156950 - 3156620
Alignment:
| Q |
19 |
aaagatgcattcgataacggatccagatagatggacaaacttgattaacattt-----------tggaatactgataatgtgggggactaagttgatata |
107 |
Q |
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| T |
3156950 |
aaagatgcattcgataacggatccagatagatggacaaacttgattaacatttgattaacattttggaatactgataatgtgggggactaagttgatata |
3156851 |
T |
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| Q |
108 |
tatatgtctacaatttcagggaccaacttgagttgttgttactcctaggactttactaggaatcaaatttagcatagaaaaataaggcactgaccatcat |
207 |
Q |
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| T |
3156850 |
tatatgtctacaatttcagggaccaacttgagttgtt---actcctaggactttactaggaatcaaatttagcatagaaaaataaggcactgaccatcat |
3156754 |
T |
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| Q |
208 |
taagaacagcaataatcagcaccatgaatggtggaaaatcaaattgccatatgagtgccagtaacataaaaccaagctgtcacataaatatttctcaagt |
307 |
Q |
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| T |
3156753 |
taagaacagcaataatcagcaccatgaatggtggaaaatcaaattgccatatgagtgccagtaacataaaaccaagctgtcacataaatatttctcaagt |
3156654 |
T |
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| Q |
308 |
cagcaataacgatagaaaattctctaagaataat |
341 |
Q |
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| T |
3156653 |
cagcaataacgatagaaaattctctaagaataat |
3156620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 44533359 - 44533287
Alignment:
| Q |
215 |
agcaataatcagcaccatgaatggtggaaaatcaaattgccatatgagtgccagtaacataaaaccaagctgt |
287 |
Q |
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| T |
44533359 |
agcaataataagcaccataaaaggtggaaaatcaaacttccatatcaaagccagcaacatgaaaccaagctgt |
44533287 |
T |
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