View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8542_low_9 (Length: 285)
Name: NF8542_low_9
Description: NF8542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8542_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 12798765 - 12799027
Alignment:
| Q |
18 |
ataatttatcttaaaatatgtgaaattacaaacggtgaaaccctatccctatcaacatacagtaagatcttcttgatgtggcaaaaaacgaaaagcatgg |
117 |
Q |
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| T |
12798765 |
ataatttatcttaaaataagttaaattacaaacggtgaaaccctatccctatcaacatacagtaagatcctcttgatgtggcaaaaaacgaaaatcatgg |
12798864 |
T |
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| Q |
118 |
tctaccagaaacgacgtagcattaaagagtttgatggtcacggactaaatgatacccaaatgtggnnnnnnngagcatcacatgtgacaaaatgtgacat |
217 |
Q |
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| T |
12798865 |
tctaccagaaacgacgtagcattgaagagtttgatggtcacggactaaatgatacccaaatgtggaaaaaaagagcatcacatgtgacaaaatgtgacat |
12798964 |
T |
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| Q |
218 |
aatgtttacctataattaccataacgaacattacagaacacagactactttttctctgcttct |
280 |
Q |
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| T |
12798965 |
aatgtttacctataattaccataacgaacattactgaacacagactactttttctctgcttct |
12799027 |
T |
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