View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8543_low_10 (Length: 208)
Name: NF8543_low_10
Description: NF8543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8543_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 41134296 - 41134124
Alignment:
| Q |
15 |
aagaaaagaacaaaattgttatagaccaaagagaatgacgtgtgtgaaccataaagctagcttagttattcaacatgtcacgcgcgcaacgacaacaaca |
114 |
Q |
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| T |
41134296 |
aagaaaagaacaaaattgttatagaccaaagagaatgacgtgtgtgaaccataaagctagcttagttattcaacatgtcacgcgcgcaacaacaacaaca |
41134197 |
T |
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| Q |
115 |
acaacgtgggaaacaacnnnnnnnnncaagtcatagaatgagtcctatcatctatgcttcttctcttctctctca |
189 |
Q |
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| T |
41134196 |
acaacgtgggaaacaac--aaaaaaacaagtcatagaatgagtcctatcatctatgcttcttctcttctctctca |
41134124 |
T |
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