View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8543_low_2 (Length: 371)
Name: NF8543_low_2
Description: NF8543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8543_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 34899900 - 34899548
Alignment:
| Q |
1 |
gctatttgatgtcaacaaaagctaaattgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggt |
100 |
Q |
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| T |
34899900 |
gctatttgatgtcaacaaaagctaaattgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggt |
34899801 |
T |
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| Q |
101 |
atgtatcttccaactacaaaattttatgtgaatttgtgcagatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899800 |
atgtatcttccaactacaaaattttatgtgaatttgtgcagatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttg |
34899701 |
T |
|
| Q |
201 |
catatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcctaataactaagaacatttttagagac |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34899700 |
catatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcctaataactaagaacatttttagagac |
34899602 |
T |
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| Q |
301 |
acattttcgatattcaattttctgcattcagctaccaactaattatttgtaagt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899601 |
acattttcgatattcaattttctgcattcagctaccaactaattatttgtaagt |
34899548 |
T |
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