View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8543_low_4 (Length: 364)
Name: NF8543_low_4
Description: NF8543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8543_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 2448320 - 2447973
Alignment:
| Q |
1 |
ttgaatccagtctgcagttatagactgacttcatgttttttccgtctctaattttccgtcgctgatgccannnnnnnaaatactatgaatgaaataaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
2448320 |
ttgaatccagtctgcagttatagactgacttcatgttttttccgtctctaattttccgtcgctgatgcaatttttttaaatactatgaatgaaataaatg |
2448221 |
T |
|
| Q |
101 |
gaatgagataggagataaaaaggtatacttactttccaccaaatgtcatcaattgtacaactgcaaatacagtaccacctttagcaccatgatacatgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448220 |
gaatgagataggagataaaaaggtatacttactttccaccaaatgtcatcaattgtacaactgcaaatacagtaccacctttagcaccatgatacatgac |
2448121 |
T |
|
| Q |
201 |
cattctactaccataatatgacataaaacaccattgaacatacacaatagcattgcttcctatagctaagcctttaaccaagccttgtttcaatcccaac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448120 |
cattctactaccataatatgacataaaacaccattgaatatacacaatagcattgcttcctatagctaagcctttaaccaagccttgtttcaatcccaac |
2448021 |
T |
|
| Q |
301 |
ttcactgatccttgaagtgaatcagagaaagcagatatagtcttattt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2448020 |
ttcactgatccttgaagtgaatcagagaaagcagatatagtcttattt |
2447973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 158 - 313
Target Start/End: Original strand, 2678077 - 2678232
Alignment:
| Q |
158 |
caactgcaaatacagtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaacatacacaatagcattgct |
257 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||| | || | |||| | ||||||| |
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|
| T |
2678077 |
caacagcaaatacagtaccacctttagcaccatgatacatgaccattctgctaccataaaaggacataaaggaccatatagcaaaaacaacaccattgct |
2678176 |
T |
|
| Q |
258 |
tcctatagctaagcctttaaccaagccttgtttcaatcccaacttcactgatcctt |
313 |
Q |
| |
|
|||||| || ||||||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
2678177 |
tcctatggccaagcctttagctaagccttgtttcaatcccaacttcactgatcctt |
2678232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 169 - 313
Target Start/End: Original strand, 2573610 - 2573754
Alignment:
| Q |
169 |
acagtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaacatacacaatagcattgcttcctatagcta |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| | || | |||| | ||||||||||||| ||| |
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|
| T |
2573610 |
acagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacatcaaagaccatacagcaaaaacaagaccattgcttcctatgccta |
2573709 |
T |
|
| Q |
269 |
agcctttaaccaagccttgtttcaatcccaacttcactgatcctt |
313 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
2573710 |
tgcctttcgccaagccttgtttcaatcccaatttcactgatcctt |
2573754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 158 - 313
Target Start/End: Complemental strand, 2619308 - 2619153
Alignment:
| Q |
158 |
caactgcaaatacagtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaacatacacaatagcattgct |
257 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| ||||| | || | | || | ||||||| |
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|
| T |
2619308 |
caacagcaaatacagtaccacctttagcaccatgatacatgaccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattgct |
2619209 |
T |
|
| Q |
258 |
tcctatagctaagcctttaaccaagccttgtttcaatcccaacttcactgatcctt |
313 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||||| ||||||||||||| |
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|
| T |
2619208 |
tcctatgcctaagcctttagctaagccttgtttcaatcccaatttcactgatcctt |
2619153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 169 - 313
Target Start/End: Original strand, 2645870 - 2646014
Alignment:
| Q |
169 |
acagtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaaca--ccattgaacatacacaatagcattgcttcctatagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| | | |||| || | |||| | ||||||||||||| || |
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|
| T |
2645870 |
acagtaccacctttagcaccatgatacatgaccattctgctaccataataagtcataaaagaagctattg--caaaaacaacaccattgcttcctatggc |
2645967 |
T |
|
| Q |
267 |
taagcctttaaccaagccttgtttcaatcccaacttcactgatcctt |
313 |
Q |
| |
|
|| |||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
2645968 |
aaaacctttagctaagccttgtttcaatcccaacttcactgatcctt |
2646014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 334
Target Start/End: Original strand, 2601092 - 2601254
Alignment:
| Q |
172 |
gtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaacatacacaatagcattgcttcctatagctaagc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || | |||| | ||||||||||||| |||||| |
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|
| T |
2601092 |
gtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagc |
2601191 |
T |
|
| Q |
272 |
ctttaaccaagccttgtttcaatcccaacttcactgatccttgaagtgaatcagagaaagcag |
334 |
Q |
| |
|
||||| | ||||||||||||||||||||||||| || ||||| | | |||||||||||||| |
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|
| T |
2601192 |
ctttagctaagccttgtttcaatcccaacttcagtggtccttccaaagcatcagagaaagcag |
2601254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 313
Target Start/End: Complemental strand, 2585603 - 2585462
Alignment:
| Q |
172 |
gtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaacatacacaatagcattgcttcctatagctaagc |
271 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||| | || | || | ||||||||||||| || |||| |
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|
| T |
2585603 |
gtaccacctttagcaccatgatacataaccattctgctaccataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatggccaagc |
2585504 |
T |
|
| Q |
272 |
ctttaaccaagccttgtttcaatcccaacttcactgatcctt |
313 |
Q |
| |
|
| ||| | || ||||||||||||||||||||||||||||||| |
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|
| T |
2585503 |
ccttagctaaaccttgtttcaatcccaacttcactgatcctt |
2585462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 313
Target Start/End: Complemental strand, 2432128 - 2431973
Alignment:
| Q |
158 |
caactgcaaatacagtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaacatacacaatagcattgct |
257 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||||||||||| | |||||||| || | || ||| ||||| | |||| |||| | ||||||| |
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|
| T |
2432128 |
caactacaaatactgtaccgcctttagcaccatgatacatgaccattatgctaccatagtagaatattaaagaccatatagcatagacaacaccattgct |
2432029 |
T |
|
| Q |
258 |
tcctatagctaagcctttaaccaagccttgtttcaatcccaacttcactgatcctt |
313 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||||||| || || |||||||| |||| |
|
|
| T |
2432028 |
tcctatggctaagcctttagccaaaccttgtttcaaacctaatttcactgaccctt |
2431973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 33801906 - 33801844
Alignment:
| Q |
251 |
cattgcttcctatagctaagcctttaaccaagccttgtttcaatcccaacttcactgatcctt |
313 |
Q |
| |
|
||||||||||||| |||||||||| | |||||||||||||||||||| |||||| |||||| |
|
|
| T |
33801906 |
cattgcttcctatgcttaagcctttagctaagccttgtttcaatcccaatttcacttatcctt |
33801844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 53664743 - 53664789
Alignment:
| Q |
267 |
taagcctttaaccaagccttgtttcaatcccaacttcactgatcctt |
313 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| |||||| |||||| |
|
|
| T |
53664743 |
taagcctttagctaagccttgtttcaatcccaatttcactcatcctt |
53664789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 17874210 - 17874270
Alignment:
| Q |
158 |
caactgcaaatacagtaccacctttagcaccatgatacatgaccattctactaccataata |
218 |
Q |
| |
|
|||||||||| || || || |||||||||||||||||||| |||| | | ||||||||||| |
|
|
| T |
17874210 |
caactgcaaaaactgtccctcctttagcaccatgatacataaccaatttgctaccataata |
17874270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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