View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8543_low_5 (Length: 300)
Name: NF8543_low_5
Description: NF8543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8543_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 26846394 - 26846665
Alignment:
| Q |
19 |
tcaacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaataggatgaagatcatagcctatatgatccaaaaatatggtcatattt |
118 |
Q |
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| T |
26846394 |
tcaacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaataggatgaagatcatagcttatatgatccaaaaatatggtcatattt |
26846493 |
T |
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| Q |
119 |
gtttaatgtttaaaataaaagaccgagcaatataggaaataacatttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatact |
218 |
Q |
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| T |
26846494 |
gtttaatgtttaaaataaaagactgagcaatataggaaataacatttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatact |
26846593 |
T |
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| Q |
219 |
ttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacagcaggtttcttctcac |
290 |
Q |
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| T |
26846594 |
ttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacaacaggtttcttctcac |
26846665 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 54881118 - 54881202
Alignment:
| Q |
163 |
tttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
247 |
Q |
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| T |
54881118 |
tttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
54881202 |
T |
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