View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8543_low_7 (Length: 254)
Name: NF8543_low_7
Description: NF8543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8543_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 45082886 - 45083122
Alignment:
| Q |
1 |
tagttgttatggagagatgaagaatttgaagctgcaaaattatattgaccagaatctccttttgcttcccacagcgaatcttgattaacacttccttccc |
100 |
Q |
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| T |
45082886 |
tagttgttatggagagatgaagaatttgaagctgcaaaattatattgaccagaatctccttttacttcccacagcgaatcttgattaacacttccttccc |
45082985 |
T |
|
| Q |
101 |
tagaaccctcacttcaagctctggaaatgtttcattgtgccgataacattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatga |
200 |
Q |
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| T |
45082986 |
tagaaccctcacttcaagctctggaaatgtttcattgtgccgataacattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatga |
45083085 |
T |
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| Q |
201 |
gatcttgttatggtgatcaatgatcctgcacctttct |
237 |
Q |
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| T |
45083086 |
gatcttgttatggtgatcaatgatcccgcacctttct |
45083122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 45039701 - 45039468
Alignment:
| Q |
4 |
ttgttatggagagatgaagaatttgaagctgcaaaattatattgaccagaatctccttttgcttcccacagcgaatcttgattaacacttccttccctag |
103 |
Q |
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| T |
45039701 |
ttgttatggacagatgaagaagttgaagctgggacattatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctag |
45039602 |
T |
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| Q |
104 |
aaccctcacttcaagctctggaaatgtttcattgtgccgataacattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatgagat |
203 |
Q |
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| T |
45039601 |
aatcctagcttcaacctctagaagtgattcatttctcccgtaacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagat |
45039502 |
T |
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| Q |
204 |
cttgttatggtgatcaatgatcctgcacctttct |
237 |
Q |
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| T |
45039501 |
cttgttatggtgctcaatgatcctgcatctttct |
45039468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 45065474 - 45065380
Alignment:
| Q |
143 |
ataacattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatgagatcttgttatggtgatcaatgatcctgcacctttct |
237 |
Q |
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||||||||||| ||||||||||||||| || | |||||| |||||| || | ||| |||||||||||| || ||| |||||||||| |||||| |
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| T |
45065474 |
ataacattcttcagtgttcatttcacctatcgtagtgtctttgtcaattagtacatgggatcttgttatgttgctcattgatcctgcatctttct |
45065380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29377457 - 29377230
Alignment:
| Q |
1 |
tagttgttatggagagatgaagaatttgaagctgcaaaattatattgaccagaatctccttttgcttcccacagcgaatcttgattaacacttccttccc |
100 |
Q |
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||||||||| |||||||||||||| |||||||| | ||||||||||||| |||| ||| |||| | ||||| ||||||||||||||||||| ||||| |
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| T |
29377457 |
tagttgttacggagagatgaagaagctgaagctgggacattatattgaccacaatcccctcttgcatgccacaatgaatcttgattaacacttcattccc |
29377358 |
T |
|
| Q |
101 |
tagaaccctcacttcaagctctggaaatgtttcattgtgccgataacattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatga |
200 |
Q |
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||||||||| |||||| |||| || || |||||| ||| |||||||||| ||| ||||||||| | ||||||||||| |||||| | || ||| |
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| T |
29377357 |
tagaaccctagcttcaacctctacaagtgattcatttcgcccgtaacattcttcagttttcatttcatctattgcagtgtctttgtcaattaagatatgg |
29377258 |
T |
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| Q |
201 |
gatcttgttatggtgatcaatgatcctg |
228 |
Q |
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||||||||||||||| ||| ||| |||| |
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| T |
29377257 |
gatcttgttatggtgctcactgaccctg |
29377230 |
T |
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