View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8544_high_3 (Length: 318)
Name: NF8544_high_3
Description: NF8544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8544_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 1935126 - 1935410
Alignment:
| Q |
19 |
aaagtgatggtagattttaaacggaaaatgatatatcatatgtttaatatagacacagtataagtctataagtctatcacacgttgatggaccaaataaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1935126 |
aaagtgatggtagattttaaacggaaaatgatatatcatatgtttaatatagacacagtataagtctataagtctatcacacgttgatggaccaaataaa |
1935225 |
T |
|
| Q |
119 |
gacataaatataaattatggcataaagaaatatgataacaatttatccatggtatattgttatcaaagaccaatcacaacagctgtataatatatcagta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1935226 |
gacataaatataaattatggcataaagaaatatgataacaatttatccatggtatattgttatcaaagaccaatcacaacagctgtataatatatcagta |
1935325 |
T |
|
| Q |
219 |
ccatctatagataatactagagacattgattagattatatctcaac-nnnnnnnccagtttaaactaggtttactacttaacaca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1935326 |
ccatctatagataatactagagacattgattagattatatctcaacaaaaaaaaccattttaaactaggtttactacttaacaca |
1935410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 2721280 - 2721389
Alignment:
| Q |
111 |
caaataaagacataaata-taaattatggcataaagaaatatgataacaatttatccatg--gtatattgttatcaaagaccaatcacaacagctgtata |
207 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||||||| ||||||| || ||||||| || ||||||||||||| ||| ||| ||| |||||||| |
|
|
| T |
2721280 |
caaataaatacataaataatacattatggcataaagaaatacgataacagttgatccatgatttacattgttatcaaagtccagtcataac-gctgtata |
2721378 |
T |
|
| Q |
208 |
atatatcagta |
218 |
Q |
| |
|
|||||| |||| |
|
|
| T |
2721379 |
atatataagta |
2721389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 2716623 - 2716682
Alignment:
| Q |
109 |
accaaataaagacataaata-taaattatggcataaagaaatatgataacaatttatcca |
167 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2716623 |
accaaataaatacataactaatatattatggcataaagaaatatgataacaattgatcca |
2716682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 2719717 - 2719776
Alignment:
| Q |
109 |
accaaataaagacataaata-taaattatggcataaagaaatatgataacaatttatcca |
167 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2719717 |
accaaataaatacataactaatatattatggcataaagaaatatgataacaattgatcca |
2719776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 2716709 - 2716771
Alignment:
| Q |
202 |
tgtataatatatcagtaccatctatagataatactagagacattgattagattatatctcaac |
264 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
2716709 |
tgtataatatatcagtactataagtagataatactagagacattgattagcctatatcccaac |
2716771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 2719803 - 2719865
Alignment:
| Q |
202 |
tgtataatatatcagtaccatctatagataatactagagacattgattagattatatctcaac |
264 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
2719803 |
tgtataatatatcagtactataagtagataatactagagacattgattagcctatatcccaac |
2719865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 2763227 - 2763273
Alignment:
| Q |
21 |
agtgatggtagattttaaacggaaaatgatatatcatatgtttaata |
67 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
2763227 |
agtgatggttgattataaacggaaaatgatatatcataggtttaata |
2763273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University