View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8544_low_11 (Length: 242)

Name: NF8544_low_11
Description: NF8544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8544_low_11
NF8544_low_11
[»] chr4 (4 HSPs)
chr4 (1-223)||(34333927-34334152)
chr4 (4-131)||(3216334-3216460)
chr4 (4-131)||(6673678-6673805)
chr4 (4-114)||(9353267-9353377)
[»] chr1 (2 HSPs)
chr1 (38-159)||(23038388-23038509)
chr1 (4-114)||(36215583-36215693)
[»] chr3 (2 HSPs)
chr3 (2-131)||(559544-559673)
chr3 (4-95)||(12671491-12671582)
[»] chr2 (2 HSPs)
chr2 (4-131)||(11925867-11925994)
chr2 (2-95)||(33398143-33398236)
[»] chr6 (1 HSPs)
chr6 (4-114)||(28871549-28871659)
[»] chr8 (2 HSPs)
chr8 (4-136)||(9330162-9330294)
chr8 (4-113)||(10332726-10332835)
[»] chr7 (5 HSPs)
chr7 (4-114)||(30758456-30758566)
chr7 (4-95)||(7747297-7747388)
chr7 (4-131)||(25136905-25137032)
chr7 (65-160)||(28755549-28755646)
chr7 (65-160)||(28755817-28755914)
[»] scaffold0718 (1 HSPs)
scaffold0718 (4-131)||(7293-7420)
[»] scaffold0210 (2 HSPs)
scaffold0210 (4-95)||(23522-23613)
scaffold0210 (4-95)||(24526-24617)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34333927 - 34334152
Alignment:
Q  1 aatcattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcct 100  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  34333927 aatcgttgaaggagttttatcaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaattaattcct 34334026  T
Q  101 ctgttgttggggattaataggactagatgaaaacttcttatgtgatttgatctttg---attgttttaatttattatgttaattttcttgtcatcatgct 197  Q
    | || ||||||||||| ||||||||||||||||||||||| |||||||| ||||||   ||||||||||||||||| ||||||||||||||| |||| ||    
T  34334027 ccgtagttggggattagtaggactagatgaaaacttcttacgtgatttggtctttgattattgttttaatttattaagttaattttcttgtcttcatact 34334126  T
Q  198 taatgcttttatcattttagaattaa 223  Q
    |||||||||||| |||||||||||||    
T  34334127 taatgcttttattattttagaattaa 34334152  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 3216460 - 3216334
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || ||||||||| |||| ||||||||||  || |||||||||||||||  ||||||||||||  |||| |    
T  3216460 cattgaaggagatttatcaagaatcgttcatgaattgttcttgtaattcttctttaattctt-tctcttgtttatttgctatgagtaactaaaccctccg 3216362  T
Q  104 ttgttggggattaataggactagatgaa 131  Q
    ||||||||||| | |||  |||||||||    
T  3216361 ttgttggggatgagtagacctagatgaa 3216334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 6673805 - 6673678
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || ||||||||| |||| ||||||||||   | |||||||||||||||  ||||||||||||  |||| |    
T  6673805 cattgaaggagatttatcaagaatcgttcatggattgttcttgtaattcttctttaatatctttctcttgtttatttgctatgagtaactaaaccctccg 6673706  T
Q  104 ttgttggggattaataggactagatgaa 131  Q
    ||||||||||| | |||  |||||||||    
T  6673705 ttgttggggatgagtagacctagatgaa 6673678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 9353377 - 9353267
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || || |||||| |||| |||||||||||  | |||||||||||||||  |||| |||||||  |||| |    
T  9353377 cattgaaggagatttatcaagaatcgttcatggatcgttcttgtaattcttctttaatctctttctcttgtttatttgctatgaataactaaaccctccg 9353278  T
Q  104 ttgttggggat 114  Q
    |||||||||||    
T  9353277 ttgttggggat 9353267  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 23038388 - 23038509
Alignment:
Q  38 ttgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctgttgttggggattaataggactagatgaaaacttc 137  Q
    |||||||| |||| |||| ||||||  | |||||||||||||||| ||||||||||||  ||||||||||  ||||| | ||| |||||||||| ||||     
T  23038388 ttgttcttgtaattcttccttaatctctttctcttgtttatttgttatgagtaactaaaccctctgttgtcagggatgagtagaactagatgaatacttg 23038487  T
Q  138 ttatgtgatttgatctttgatt 159  Q
    ||||||||||||||||||||||    
T  23038488 ttatgtgatttgatctttgatt 23038509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 36215583 - 36215693
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || || |||||| |||| |||||||||||  | |||||||||||||||  |||| |||||||  |||| |    
T  36215583 cattgaaggagatttatcaagaatcgttcatggatcgttcttgtaattcttctttaatctctttctcttgtttatttgctatgaataactaaaccctccg 36215682  T
Q  104 ttgttggggat 114  Q
    |||||||||||    
T  36215683 ttgttggggat 36215693  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 559544 - 559673
Alignment:
Q  2 atcattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctc 101  Q
    ||||||||| ||| ||||| |||||| |||  || |||||| || |||| ||||||||||| || |||||||||||||||  ||||||||||||  ||||    
T  559544 atcattgaaagagatttatcaagaatcgttcatggattgtttttgtaattcttctttaatctttttctcttgtttatttgctatgagtaactaaaccctc 559643  T
Q  102 tgttgttggggattaataggactagatgaa 131  Q
     |||||||||||| | |||  |||||||||    
T  559644 cgttgttggggatgagtagacctagatgaa 559673  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 12671582 - 12671491
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaa 95  Q
    ||||||||||| ||||| |||||| |||  || || |||||| |||| |||||||||||  | |||||||||||||||  |||| |||||||    
T  12671582 cattgaaggagatttatcaagaatcgttcatggatcgttcttgtaattcttctttaatctctttctcttgtttatttgctatgaataactaa 12671491  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 11925994 - 11925867
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || ||||||||| |||| |||||||||||  | |||||||||||||||  |||| |||||||  |||| |    
T  11925994 cattgaaggagatttatcaagaatcgttcatgcattgttcttgtaattcttctttaatctctttctcttgtttatttgctatgaataactaaaccctccg 11925895  T
Q  104 ttgttggggattaataggactagatgaa 131  Q
    ||||||||||| | |||  |||||||||    
T  11925894 ttgttggggatgagtagacctagatgaa 11925867  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 33398236 - 33398143
Alignment:
Q  2 atcattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaa 95  Q
    ||||||||||||| ||||  |||||| |||| || ||||||||| |||| ||||||| ||   | |||||||| ||||||| ||||||||||||    
T  33398236 atcattgaaggaggtttaccaagaatcgtttatggattgttcttgtaattcttctttgatatctttctcttgtgtatttgttatgagtaactaa 33398143  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 28871549 - 28871659
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || ||||||||| |||| |||||||||||  | |||||||||||||||  |||| |||||||  |||| |    
T  28871549 cattgaaggagatttatcaagaattgttcatggattgttcttgtaattcttctttaatctctttctcttgtttatttgctatgaataactaaaccctccg 28871648  T
Q  104 ttgttggggat 114  Q
    |||||||||||    
T  28871649 ttgttggggat 28871659  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 9330162 - 9330294
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || ||||||||| |||| |||||||||||  | ||| |||||||||||  |||| |||||||  |||| |    
T  9330162 cattgaaggagatttatcaagaattgttcatggattgttcttgtaattcttctttaatctctttcttttgtttatttgctatgaataactaaaccctccg 9330261  T
Q  104 ttgttggggattaataggactagatgaaaactt 136  Q
    ||||||||||| | |||  ||||||||| ||||    
T  9330262 ttgttggggatgagtagacctagatgaatactt 9330294  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 10332726 - 10332835
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || || |||||| |||| ||||||||||   | |||||||||||||||  |||| |||||||  |||| |    
T  10332726 cattgaaggagatttatcaagaatcgttcatggatcgttcttgtaattcttctttaatatctttctcttgtttatttgctatgaataactaaaccctccg 10332825  T
Q  104 ttgttgggga 113  Q
    ||||||||||    
T  10332826 ttgttgggga 10332835  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 30758456 - 30758566
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || || |||||| |||| |||||||||||  | |||||||||||||||  |||| |||||||  |||| |    
T  30758456 cattgaaggagatttatcaagaatcgttcatggatcgttcttgtaattcttctttaatctctttctcttgtttatttgctatgaataactaaaccctccg 30758555  T
Q  104 ttgttggggat 114  Q
    |||||||||||    
T  30758556 ttgttggggat 30758566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 7747297 - 7747388
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaa 95  Q
    ||||||||||||||||| ||| ||  ||  || |||||| || |||| |||||||||||  | |||||||||||||||| ||||||||||||    
T  7747297 cattgaaggagttttatcaaggatcattcatggattgttattctaattcttctttaatctctttctcttgtttatttgtaatgagtaactaa 7747388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 25136905 - 25137032
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| |||||| |||  || ||||||||| |||| |||||||||||  | |||||||| ||||||  |||| | |||||  |||| |    
T  25136905 cattgaaggagatttatcaagaatcgttcatggattgttcttgtaattcttctttaatctctttctcttgtgtatttgctatgaatgactaaaccctccg 25137004  T
Q  104 ttgttggggattaataggactagatgaa 131  Q
    ||||||||||| | |||  |||||||||    
T  25137005 ttgttggggatgagtagacctagatgaa 25137032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 28755646 - 28755549
Alignment:
Q  65 tatctcttgtttatttgtcatgagtaactaactcctctgttgttggggattaataggactagatgaaaac--ttcttatgtgatttgatctttgattg 160  Q
    |||||||| ||||||||| |||||||| |||   |||||||||||||||| | ||| | || ||||| ||  || |||||||||||||||||||||||    
T  28755646 tatctcttatttatttgtgatgagtaattaaacactctgttgttggggatgagtagaattacatgaatacttttgttatgtgatttgatctttgattg 28755549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 28755914 - 28755817
Alignment:
Q  65 tatctcttgtttatttgtcatgagtaactaactcctctgttgttggggattaataggactagatgaaaac--ttcttatgtgatttgatctttgattg 160  Q
    |||||||| ||||||||| |||||||| |||   |||||||||||||||| | ||| | || ||||| ||  || |||||||||||||||||||||||    
T  28755914 tatctcttatttatttgtgatgagtaattaaacactctgttgttggggatgagtagaattacatgaacacttttgttatgtgatttgatctttgattg 28755817  T

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Target: scaffold0718 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0718
Description:

Target: scaffold0718; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 7293 - 7420
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaactcctctg 103  Q
    ||||||||||| ||||| ||||||  ||  || ||||||||| |||| |||||| ||||  | |||||||||||||||  |||| |||||||  |||| |    
T  7293 cattgaaggagatttatcaagaatctttcatggattgttcttgtaattcttcttaaatctctttctcttgtttatttgctatgaataactaaaccctccg 7392  T
Q  104 ttgttggggattaataggactagatgaa 131  Q
    ||||||||||| | |||  |||||||||    
T  7393 ttgttggggatgagtagacctagatgaa 7420  T

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Target: scaffold0210 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 23613 - 23522
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaa 95  Q
    ||||||||||| ||||| |||||| |||  || || |||||| |||| |||||||||||  | |||||||||||||||  |||| |||||||    
T  23613 cattgaaggagatttatcaagaatcgttcatggatcgttcttgtaattcttctttaatctctttctcttgtttatttgctatgaataactaa 23522  T

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Target: scaffold0210; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 24617 - 24526
Alignment:
Q  4 cattgaaggagttttattaagaatggtttttgtattgttcttataatgcttctttaatcgttatctcttgtttatttgtcatgagtaactaa 95  Q
    ||||||||||| ||||| |||||| |||  || || |||||| |||| |||||||||||  | |||||||||||||||  |||| |||||||    
T  24617 cattgaaggagatttatcaagaatcgttcatggatcgttcttgtaattcttctttaatctctttctcttgtttatttgctatgaataactaa 24526  T

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