View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8544_low_12 (Length: 229)
Name: NF8544_low_12
Description: NF8544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8544_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30292261 - 30292462
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgctt |
100 |
Q |
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| T |
30292261 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaacgttttaatgctt |
30292360 |
T |
|
| Q |
101 |
attatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatga |
200 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
30292361 |
attatgcttgtatgctcta---------agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccactttcctactatga |
30292451 |
T |
|
| Q |
201 |
ataaattaatc |
211 |
Q |
| |
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||||||||||| |
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| T |
30292452 |
ataaattaatc |
30292462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30304895 - 30305106
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--- |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
30304895 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagt |
30304994 |
T |
|
| Q |
98 |
-----cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttc |
192 |
Q |
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| T |
30304995 |
gatcaaatattatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggcattatcttgtaactataactagagttccacctttc |
30305094 |
T |
|
| Q |
193 |
tactatgaataa |
204 |
Q |
| |
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|||||||||||| |
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| T |
30305095 |
tactatgaataa |
30305106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30315761 - 30315980
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--- |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
30315761 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagt |
30315860 |
T |
|
| Q |
98 |
-----cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacc-ttt |
191 |
Q |
| |
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| |||||| ||| ||| |||| | |||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||| ||| |
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| T |
30315861 |
gatcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactagagttccacctttt |
30315960 |
T |
|
| Q |
192 |
ctactatgaataaattaatc |
211 |
Q |
| |
|
||||||||||||||||||| |
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| T |
30315961 |
gtactatgaataaattaatc |
30315980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30287227 - 30287439
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--- |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
30287227 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagt |
30287326 |
T |
|
| Q |
98 |
-----cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttc |
192 |
Q |
| |
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| |||||| ||| ||| |||| | |||||||||||| |||| || |||||||||||||||| |||| ||||||||||||| |||||| |
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| T |
30287327 |
gatcaaatgttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggcattatcttg------taactagagttcctcctttc |
30287420 |
T |
|
| Q |
193 |
tactatgaataaattaatc |
211 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
30287421 |
tactatgaataaattaatc |
30287439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30300103 - 30300315
Alignment:
| Q |
1 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--- |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||| |||||||| |
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| T |
30300103 |
actttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagtattttaatgagt |
30300202 |
T |
|
| Q |
98 |
-----cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttc |
192 |
Q |
| |
|
|||||||||||| ||| |||| || ||||||||||||||||| ||||||||||||| || |||| || ||||||||||||||||| |
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| T |
30300203 |
gatcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggcaatatcttg------tatctagagttccacctttc |
30300296 |
T |
|
| Q |
193 |
tactatgaataaattaatc |
211 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
30300297 |
caccatgaataaattaatc |
30300315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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