View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8544_low_14 (Length: 219)
Name: NF8544_low_14
Description: NF8544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8544_low_14 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 5214079 - 5214281
Alignment:
| Q |
17 |
ttctatgaaatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214079 |
ttctatgaaatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttca |
5214178 |
T |
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| Q |
117 |
tcaaataactttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttaccta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214179 |
tcaaataactttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttaccta |
5214278 |
T |
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| Q |
217 |
aac |
219 |
Q |
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||| |
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| T |
5214279 |
aac |
5214281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 4842327 - 4842133
Alignment:
| Q |
25 |
aatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataa |
124 |
Q |
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||||||||||| |||||| ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4842327 |
aatatttggatctatcaaacaacaattttagtggtttgcttccagaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataa |
4842228 |
T |
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| Q |
125 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaac |
219 |
Q |
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| T |
4842227 |
ctttgaaggaaatataccttcatcaatttgtaagatgaaaaaacttaagtacttggacctctctcagaatcatttctcaggtgagttacctaaac |
4842133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 5182526 - 5182724
Alignment:
| Q |
21 |
atgaaatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaa |
120 |
Q |
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||||| |||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| | |
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| T |
5182526 |
atgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttaagtatttgaacttttcatgga |
5182625 |
T |
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| Q |
121 |
ataactttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaac |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5182626 |
atagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttgagtacttggacctctctcagaatcatttctcaggtgagttacctaaac |
5182724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 5195926 - 5196124
Alignment:
| Q |
21 |
atgaaatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaa |
120 |
Q |
| |
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|||| ||||||||||||||||| ||||| ||| |||||||| |||||||||||||| |||||||||||||||| |||||||||| |||| ||||||| | |
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| T |
5195926 |
atgatatatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttcctaatgttacctatttgaacttttcatgga |
5196025 |
T |
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| Q |
121 |
ataactttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaac |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
5196026 |
atagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttcaactcttggacttctctcaaaatcatttctcaggtgagttacctaaac |
5196124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 5173201 - 5173389
Alignment:
| Q |
25 |
aatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataa |
124 |
Q |
| |
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||||||||||| |||||| ||||| ||| |||||||| |||||| ||||||| ||||||||| ||| |||||||| |||| ||||||| |||| |
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| T |
5173201 |
aatatttggatctatcaaacaacaattttagtggtttgcttccagaagatat------attccttccaagtattacctatttgaacttttcatggaatag |
5173294 |
T |
|
| Q |
125 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
5173295 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcataataatttctcaggtgagttacctaaac |
5173389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 5160287 - 5160479
Alignment:
| Q |
27 |
tatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataact |
126 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| || || |||||||| ||| | |||||||||| |||| ||| | |||| ||||||| |||| || |
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| T |
5160287 |
tatttggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagct |
5160386 |
T |
|
| Q |
127 |
ttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
5160387 |
ttgaaggaaatataccttcatcaattggtaagataaaaaaacttttgctcttggacctctctcataatcatttctcgggtgagttaccaaaac |
5160479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 7142470 - 7142606
Alignment:
| Q |
28 |
atttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactt |
127 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| |||| |||| ||||||| |||| ||| |
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| T |
7142470 |
atttggatatatcaaacaacaatttaagtggtttgcttccagaagatattggtatattccttcctagtgttgactatctgaacttttcattgaatagctt |
7142569 |
T |
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| Q |
128 |
tgaaggaaatataccttcatcaattggtaagatgaaa |
164 |
Q |
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| T |
7142570 |
tcaaggaaatataccttaatcaattggtatgatgaaa |
7142606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 4856805 - 4856686
Alignment:
| Q |
21 |
atgaaatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaa |
120 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |
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| T |
4856805 |
atgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttacctatttgaacatttcatgga |
4856706 |
T |
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| Q |
121 |
ataactttgaaggaaatata |
140 |
Q |
| |
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||| |||||||||||||||| |
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| T |
4856705 |
atagctttgaaggaaatata |
4856686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 4856676 - 4856637
Alignment:
| Q |
176 |
cttggacctctctcataatcatttctcaggtgagttacct |
215 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |
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| T |
4856676 |
cttggacctctctcagaatcatttctcaggtgagttacct |
4856637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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