View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8544_low_3 (Length: 389)
Name: NF8544_low_3
Description: NF8544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8544_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 23 - 339
Target Start/End: Original strand, 35786499 - 35786815
Alignment:
| Q |
23 |
tgaatattcatctgctgttgttgctgattcaaaacatgttgtgcatgttgttgattcaaaacattttgtgcatgttgttcttgatcatgatgatgactac |
122 |
Q |
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| T |
35786499 |
tgaatattcatctgctgctgttgctgattcaaaacatgttgtgcatgttgttgattcaaaacattttgtgcatgttgttcttgatcatgatgatgactac |
35786598 |
T |
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| Q |
123 |
tatgaatattctgaccgtacgaggtaattgatttaacagaatcaccacttgcatgttcaaaatcttgatttagttgttgatgatgatattgttgatggtg |
222 |
Q |
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| T |
35786599 |
tatgaatattctgaccgtacgaagtaattgatttaacagaatcaccacttgcatgttcaaaatcttgatttagttgttgatgatgatattgttgatgctg |
35786698 |
T |
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| Q |
223 |
ttgcacttgcacttgcaccatttcttgatgagggttatgatgaaaatgaactaaaccattattgttattatagaaaactggttggtgatgatgatgaaaa |
322 |
Q |
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| T |
35786699 |
ttgcacttgcacttgcaccatttcttgatgagggttatgatgaaaatgaactaaaccattattgttattatagaaaactggttggtgatgatgatgaaaa |
35786798 |
T |
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| Q |
323 |
ttattgtaaacaccaaa |
339 |
Q |
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||||||||||||||||| |
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| T |
35786799 |
ttattgtaaacaccaaa |
35786815 |
T |
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