View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8544_low_4 (Length: 338)
Name: NF8544_low_4
Description: NF8544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8544_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5744859 - 5745176
Alignment:
| Q |
1 |
ttatcataatacaatacatttccattttgatacaaatactatgatgttcaccaatacacttccatttcgacgagtctatgcaaggtgcacaaaagaactc |
100 |
Q |
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| T |
5744859 |
ttatcataatacaatacatttccattttgatacaaatactatgatgttcaccaatacatttccatttcgacgagtctatgcaaggtgcacaaaaga---- |
5744954 |
T |
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| Q |
101 |
gcgacaatggaaaagataagatataacaatggtgccgcctatatgcgtaacacctccaccaaagagaaacnnnnnnncacc-aaaactcgaacaaggcat |
199 |
Q |
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| T |
5744955 |
gcggcaatggaaaagataagatataacagtggtgccgccgatatgcgtaacacctccaccaaagagaaacaaaaaaccaccaaaaactcgaacaaggcat |
5745054 |
T |
|
| Q |
200 |
cagacattgaggctgagatatacatttataacgaagcataccaccacctcaagtccgaagacatcccaataaaaaatctagccgcaaaaacaccctgaca |
299 |
Q |
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| T |
5745055 |
cagacattgaggctgagatatacatttataacgaagcataccaccacctcaagtccgaagacatcccaataaaaaatctagccgcaaaaacaccctgaca |
5745154 |
T |
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| Q |
300 |
acctaaaccagcatgcgcatat |
321 |
Q |
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| T |
5745155 |
acctaaatcagcatgcgcatat |
5745176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33356993 - 33356949
Alignment:
| Q |
1 |
ttatcataatacaatacatttccattttgatacaaatactatgat |
45 |
Q |
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| T |
33356993 |
ttatcataatacaatacatttctattatgatacaaatactatgat |
33356949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18081253 - 18081209
Alignment:
| Q |
1 |
ttatcataatacaatacatttccattttgatacaaatactatgat |
45 |
Q |
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| T |
18081253 |
ttatcataatacaatacatttctattatgatacaaatactatgat |
18081209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 31301554 - 31301474
Alignment:
| Q |
193 |
aaggcatcagacattgaggctgagatatacatttataacgaagcataccaccacctcaagtccgaagacatcccaataaaaaa |
275 |
Q |
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||||||| ||||||||||||||||||||| |||||||| |||||||| || |||||||| |||| ||| ||||| |||||| |
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| T |
31301554 |
aaggcattggacattgaggctgagatatacctttataac-aagcatactactgcctcaagttcgaa-acaccccaagaaaaaa |
31301474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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