View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8544_low_9 (Length: 267)

Name: NF8544_low_9
Description: NF8544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8544_low_9
NF8544_low_9
[»] chr2 (1 HSPs)
chr2 (25-167)||(37981883-37982025)
[»] chr4 (3 HSPs)
chr4 (25-167)||(53594349-53594489)
chr4 (81-166)||(37370620-37370707)
chr4 (205-246)||(31906319-31906360)
[»] chr5 (3 HSPs)
chr5 (73-167)||(26795238-26795334)
chr5 (113-166)||(27786467-27786520)
chr5 (113-166)||(28594208-28594261)
[»] chr3 (4 HSPs)
chr3 (73-167)||(10225396-10225492)
chr3 (73-167)||(10104619-10104715)
chr3 (73-167)||(10215767-10215863)
chr3 (113-167)||(45926712-45926766)
[»] chr8 (1 HSPs)
chr8 (113-166)||(24318180-24318233)
[»] chr7 (1 HSPs)
chr7 (205-246)||(32603550-32603591)
[»] chr1 (1 HSPs)
chr1 (113-166)||(42657978-42658031)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 37982025 - 37981883
Alignment:
Q  25 gcaagacatgtaaggtcaatgaattcacaatatctggaactagttggaaaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaat 124  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37982025 gcaagacatgtaaggtaaatgaattcacaatatctggaactagttggaaaaatgaatctcgttggacagcaaggaaaagaaaattgtgagtctcacaaat 37981926  T
Q  125 ttgtgtgagattgttgaacgagcgttttgttcacatttttaat 167  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  37981925 ttgtgtgagattgttgaatgagcattttgttcacatttttaat 37981883  T

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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 53594489 - 53594349
Alignment:
Q  25 gcaagacatgtaaggtcaatgaattcacaatatctggaactagttggaaaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaat 124  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53594489 gcaagacatgtaaggtaaatgaattcacaatatctggaactagttggaaaaatgaatctcgttggacagcaaggaaaagaaaattgtgagtctcacaaat 53594390  T
Q  125 ttgtgtgagattgttgaacgagcgttttgttcacatttttaat 167  Q
    |||| ||||||  ||||| |||| |||||||||||||||||||    
T  53594389 ttgtctgagat--ttgaatgagcattttgttcacatttttaat 53594349  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 37370620 - 37370707
Alignment:
Q  81 tctcgttggacaacaaggaaaagaaaattgtg--agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 166  Q
    |||||||||||| || ||||||||||||||||  ||||| |||||||| ||||| ||||||||| |||  ||||||||||||||||||    
T  37370620 tctcgttggacatcacggaaaagaaaattgtgggagtcttacaaatttttgtgaaattgttgaatgagtattttgttcacatttttaa 37370707  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 31906360 - 31906319
Alignment:
Q  205 tacccaccaaatccaagccttgttcaacgtatgctaaatgat 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  31906360 taccctccaaatccaagccttgttcaacgtatgctaaatgat 31906319  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 26795238 - 26795334
Alignment:
Q  73 aaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaacgagcgttttgttcacatttttaat 167  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||  | |||||||| |||| |||||||||||||||||||    
T  26795238 aaaatgaatctcgttggacagcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaat 26795334  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 27786520 - 27786467
Alignment:
Q  113 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 166  Q
    ||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||    
T  27786520 agtctcataaatttttgtgagattgttgaatgagcattttgttcacatttttaa 27786467  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 28594208 - 28594261
Alignment:
Q  113 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 166  Q
    |||||||||||||| ||||||||||||||| |||| |||| |||||||||||||    
T  28594208 agtctcacaaatttttgtgagattgttgaatgagcattttattcacatttttaa 28594261  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 10225396 - 10225492
Alignment:
Q  73 aaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaacgagcgttttgttcacatttttaat 167  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||  | |||||||| |||| |||||||||||||||||||    
T  10225396 aaaatgaatctcgttggacagcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaat 10225492  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 10104619 - 10104715
Alignment:
Q  73 aaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaacgagcgttttgttcacatttttaat 167  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||  |  | |||||||| |||| |||||||||||||||||||    
T  10104619 aaaatgaatctcggtggacagcaaggataagaaaattgtgagtctcacaaatttgtgacattgtttgttgaatgagcattttgttcacatttttaat 10104715  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 10215767 - 10215863
Alignment:
Q  73 aaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaacgagcgttttgttcacatttttaat 167  Q
    ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||  | ||||| || |||| |||||||||||||||||||    
T  10215767 aaaatgaatctcggtggacagcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttaaatgagcattttgttcacatttttaat 10215863  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 45926712 - 45926766
Alignment:
Q  113 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaat 167  Q
    ||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||    
T  45926712 agtctcataaatttttgtgagattgttgaatgagcattttgttcacatttttaat 45926766  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 24318233 - 24318180
Alignment:
Q  113 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 166  Q
    |||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||    
T  24318233 agtctcacaaatttttgtaagattgttgaatgagcattttgttcacatttttaa 24318180  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 32603591 - 32603550
Alignment:
Q  205 tacccaccaaatccaagccttgttcaacgtatgctaaatgat 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  32603591 taccctccaaatccaagccttgttcaacgtatgctaaatgat 32603550  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 42658031 - 42657978
Alignment:
Q  113 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 166  Q
    |||||||||||||| ||||||||||||||| |||  || |||||||||||||||    
T  42658031 agtctcacaaatttttgtgagattgttgaatgagtattgtgttcacatttttaa 42657978  T

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