View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8545_low_1 (Length: 325)
Name: NF8545_low_1
Description: NF8545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8545_low_1 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 4939815 - 4940091
Alignment:
| Q |
21 |
atagtttctgaaatttactttatgaattcacaattgtttggtcatgactcatgagcatagtctatggaaaatcaatacattaggcttttggacaaccaca |
120 |
Q |
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| T |
4939815 |
atagtttctgaaatttactttatgaattcacaattgtttggtcatgactcatgagcatagtctatggaaaatcaatacattaggcttttggacaaccaca |
4939914 |
T |
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| Q |
121 |
ccaatggatttgacattttatcttaatctaaaactataaaacattatgtagttattatatgtattcaaacattcacttttccattcaatattatatttct |
220 |
Q |
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| T |
4939915 |
ccaatggatttgacattttatcttcatctaaaactataaaacattatgtagttattatttgtattcaaatattcacttttccattcaatattatatttct |
4940014 |
T |
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| Q |
221 |
aacttacacttgacacaccaataatagttacatacctaatattgtaaagagaaatgctatatatcccgaaggatatt |
297 |
Q |
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| T |
4940015 |
aacttacacttgacacaccaataatagttacatacctaatattgtaaagagaaatgctatatatcccgaaggatatt |
4940091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 4952463 - 4952496
Alignment:
| Q |
292 |
gatattatagcgaagaactcacgattgagattcc |
325 |
Q |
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| T |
4952463 |
gatattatagcgaagaactcacgattgagattcc |
4952496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 48077422 - 48077471
Alignment:
| Q |
267 |
aagagaaatgctatatatcccgaaggatattatagcgaagaactcacgat |
316 |
Q |
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| T |
48077422 |
aagagcaatgctatatatcccaaaggataatatagcgaaggattcacgat |
48077471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 31605058 - 31605116
Alignment:
| Q |
267 |
aagagaaatgctatatatcccgaaggatattatagcgaagaactcacgattgagattcc |
325 |
Q |
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| T |
31605058 |
aagagcaatgctatatatcccgaaggatcttatagtgaagaactcacaattgagattcc |
31605116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 45101998 - 45102050
Alignment:
| Q |
273 |
aatgctatatatcccgaaggatattatagcgaagaactcacgattgagattcc |
325 |
Q |
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| T |
45101998 |
aatgctatatatcgggaaggatgttatagcgaagaactcacgattgaggttcc |
45102050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 26912202 - 26912242
Alignment:
| Q |
277 |
ctatatatcccgaaggatattatagcgaagaactcacgatt |
317 |
Q |
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| T |
26912202 |
ctatatattccgaaggatattatagcgaagaattcacgatt |
26912242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 41047274 - 41047321
Alignment:
| Q |
266 |
aaagagaaatgctatatatcccgaaggatattatagcgaagaactcac |
313 |
Q |
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| T |
41047274 |
aaagagcaatgctatacatccccaaggatattatagcgaaggactcac |
41047321 |
T |
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