View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8545_low_6 (Length: 251)
Name: NF8545_low_6
Description: NF8545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8545_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 47893688 - 47893459
Alignment:
| Q |
1 |
gttggagaatggtacttcctcgtaatgtgttgtgttccactcagggattttaaggtttggaattttgatcatggtttcggatggattaaggaatggtgta |
100 |
Q |
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| T |
47893688 |
gttggagaatgttacttcctcgtattgtgttgtgttccactcagggattttaaggtttggaattttgatcatggtttcggatggattaaggaatggtgta |
47893589 |
T |
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| Q |
101 |
tgagtgagtgagaggagtaattgattgcagtgtgactcgtgtagctagctagctatatatagaaagaaatgaatatca--atg---ctatgcatgtggtt |
195 |
Q |
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| T |
47893588 |
tgagtgactgagaggagtaattgattgcagtgtgactcgtgtagcta----gctatatatagaaagaaatgaataatatcatgtgcctatgtatgtggtt |
47893493 |
T |
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| Q |
196 |
tgaaaaatttaactgtggtttgagtaagtctact |
229 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
47893492 |
tgaaaaatttaactgtggtttgagtaagtctact |
47893459 |
T |
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