View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8545_low_7 (Length: 227)
Name: NF8545_low_7
Description: NF8545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8545_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 34055056 - 34054849
Alignment:
| Q |
18 |
acagacagtaagggaagaactgttgacttcaagaacacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggctgtcggacaaca |
117 |
Q |
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| T |
34055056 |
acagacagtaagggaagaactgttgacttcaagaacacttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggctgtcggacaaca |
34054957 |
T |
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| Q |
118 |
gttatagccaaatcaaaagcttggcgaccgaggagtgaagcaatactttaggccagagttcttgaataggctggatgaaattattttgaggcaacttaca |
217 |
Q |
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| T |
34054956 |
gttataaccaaatcaaaagcttggcgaccgaggagtgaagcaatactttaggccagagttcttgaataggctggatgaaatta--tcgaggcaacttaca |
34054859 |
T |
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| Q |
218 |
taactggatg |
227 |
Q |
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|||||||||| |
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| T |
34054858 |
taactggatg |
34054849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 47818005 - 47818213
Alignment:
| Q |
24 |
agtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtg-tgattgtgaa-aggaggctgtcggacaacagt |
119 |
Q |
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| T |
47818005 |
agtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgctgaccttgactatgatga-gaaggacaacagt |
47818103 |
T |
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| Q |
120 |
tatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaa---attattttgaggcaactta |
215 |
Q |
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| T |
47818104 |
tataaccgaatcaaaagcttggtgatcgaggagctgaagcaatactttaggccagagttcttgaataggctggatgaaatgattgttttcaggcaactta |
47818203 |
T |
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| Q |
216 |
cataactgga |
225 |
Q |
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| T |
47818204 |
caaaactgga |
47818213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 47383029 - 47383148
Alignment:
| Q |
110 |
ggacaacagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaa---attattttg |
205 |
Q |
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| T |
47383029 |
ggacagcagttataaccgaatcaaaagcttggtgaccgaggagctgaagcaatactttaggccagagttcttgaataggctggatgaaatgattgttttc |
47383128 |
T |
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| Q |
206 |
aggcaacttacataactgga |
225 |
Q |
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| T |
47383129 |
aggcaacttacaaaactgga |
47383148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 47382904 - 47382992
Alignment:
| Q |
18 |
acagacagtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggagg |
104 |
Q |
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| T |
47382904 |
acagatagtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtgattgagaaaggagg |
47382992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 45115856 - 45115942
Alignment:
| Q |
21 |
gacagtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggc |
105 |
Q |
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| T |
45115856 |
gacagtaaaggccgaactgtggatttcaagaacacacttcttataatgacgtcaaatgttggaagcagtgtgattgagaaaggaggc |
45115942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 40245618 - 40245712
Alignment:
| Q |
18 |
acagacagtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggctgtcg |
110 |
Q |
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||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |
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| T |
40245618 |
acagatagtaagggaagaactgtggacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtgatcgagaaaggaggccgtcg |
40245712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 40245743 - 40245832
Alignment:
| Q |
110 |
ggacaacagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaaat |
198 |
Q |
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| T |
40245743 |
ggacagcagttataacagaatcaagagcttggtgaccgaagagctgaaacaatactttaggccagagttcttgaataggcttgatgaaat |
40245832 |
T |
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