View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8545_low_8 (Length: 207)
Name: NF8545_low_8
Description: NF8545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8545_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35786792 - 35786868
Alignment:
| Q |
1 |
atgaaaattattgtaaacaccaaatgggacaaaattattgtaaactgagaaaccagaaggacgaggaagtaaaggac |
77 |
Q |
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| T |
35786792 |
atgaaaattattgtaaacaccaaatgggacaaaattattgtaaactgagaaaccagaaggacgaggaagtaaaggac |
35786868 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 198
Target Start/End: Original strand, 35786958 - 35786989
Alignment:
| Q |
167 |
ttaagctgagccctagaaccatagagaataat |
198 |
Q |
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| T |
35786958 |
ttaagctgagccctagaaccatagagaataat |
35786989 |
T |
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