View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8546_high_10 (Length: 213)
Name: NF8546_high_10
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8546_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 28010184 - 28009998
Alignment:
| Q |
20 |
taccagactttttgtaatttactaagtttctttgacgagaatatatgttatagccta-agaaaattatttccatggataacaatgcagaaacttaagagt |
118 |
Q |
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| T |
28010184 |
taccagactttttgtaatttactaagtttctttgacgagaatatatgttatagcctacagaaaattatttccatggataacaatgcagaaacttaagagt |
28010085 |
T |
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| Q |
119 |
gcaaaacaaaagggttttatt--------ttttctctcaaagaagtttataaaaatactagtttagccgccttatacattccctcattg |
199 |
Q |
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| T |
28010084 |
gcaaaacaaaagggttttattttttatttttttctctcaaagaagtttatataaatactagtttagccgcct--tacattccctcattg |
28009998 |
T |
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