View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8546_low_1 (Length: 855)
Name: NF8546_low_1
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8546_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Complemental strand, 28010184 - 28009672
Alignment:
| Q |
20 |
taccagactttttgtaatttactaagtttctttgacgagaatatatgttatagccta-agaaaattatttccatggataacaatgcagaaacttaagagt |
118 |
Q |
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| T |
28010184 |
taccagactttttgtaatttactaagtttctttgacgagaatatatgttatagcctacagaaaattatttccatggataacaatgcagaaacttaagagt |
28010085 |
T |
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| Q |
119 |
gcaaaacaaaagggttttatttttt--------ctctcaaagaagtttataaaaatactagtttagccgccttatacattccctcattgtaaggaaggtg |
210 |
Q |
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| T |
28010084 |
gcaaaacaaaagggttttattttttatttttttctctcaaagaagtttatataaatactagtttagccgcctta--cattccctcattgtaaggaaggtg |
28009987 |
T |
|
| Q |
211 |
gtgtttggtcgtcgtattaagtggcgtctattggtgttttcttgttagtacgatgtttgttggttcttattgacatattcattttaatttattacacatc |
310 |
Q |
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| T |
28009986 |
gtgtttggtcgtcgtattaagtgg-gtctattggtgttttcttgttagtacaatgttcgttggttcttattgacatattcattttaacttattacacatc |
28009888 |
T |
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| Q |
311 |
tgatgaaaatttggacgtctccatgttgcagattcggaagtatgaacatcctggttacctgtattttgtcatatgtgtaaccactataatgttgtcgttg |
410 |
Q |
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| T |
28009887 |
tgatgaaaatttggacgtctccatgttgcagattcggaagtatgaatatcctggttacctgtattttgtcatatgtgtaaccactataatgtagtcgttg |
28009788 |
T |
|
| Q |
411 |
tatattattaaccaaagtgtcgtagaattgtttgcagattcact-ttttacagtttgttgcaatcttaattttctaatgatctatgtatttgtccaattt |
509 |
Q |
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| T |
28009787 |
tatattattaaccaaactgtcgtaggattgtttgcaaattcacttttttacagcttgttgcaatcttaattttctaatgatctatgtatttgtccaattt |
28009688 |
T |
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| Q |
510 |
gaatgaatgaatgtct |
525 |
Q |
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| T |
28009687 |
gaatgaatgaatgtct |
28009672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 590 - 848
Target Start/End: Complemental strand, 28009596 - 28009340
Alignment:
| Q |
590 |
gacaagatgaatgggagtttgaatgttgatgtatttataatacatgattcgaacccacattctggaattaatttcaaatatatccatattagaatcatct |
689 |
Q |
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| T |
28009596 |
gacaagatgaatgggagtttgaatgttgatgtatttataatacttgattcgaacccacactctggaattaatttcaaatatatccatattagaatcatct |
28009497 |
T |
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| Q |
690 |
catcttaatcttgggtaacacctccnnnnnnnnnnnncacgttcggcaagaaatttatatttacatagcagtgttttaaggttcatgaatattgtctaga |
789 |
Q |
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| T |
28009496 |
catcttaatcttgggtaacacctccaaaaaataaaaacacgttgggcaagaaatttatatttacata--agtgttttaaggttcatgaatattgtctaga |
28009399 |
T |
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| Q |
790 |
aaaataaggtctgtgaatttgtttatatttagatgcttctttaattgagtattatctac |
848 |
Q |
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| T |
28009398 |
aaaataaggtttgtgaatttgcttatatttagatgtttctttaattgagtattatctac |
28009340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 376 - 517
Target Start/End: Complemental strand, 32849243 - 32849100
Alignment:
| Q |
376 |
ttgtcatatgtgtaaccactataatgttgtcgttgtatattattaaccaaagtgtcgtagaattgtttgcagattcac--tttttacagtttgttgcaat |
473 |
Q |
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| T |
32849243 |
ttgtcatatttgtaggcactattatgttgttgttgtatactattaacctaggtgttccaagattgtttgcgaattcacccttttttgagtttttagcaat |
32849144 |
T |
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| Q |
474 |
cttaattttctaatgatctatgtatttgtccaatttgaatgaat |
517 |
Q |
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| T |
32849143 |
cttaaatttgcaatgatctatgtatttgtctaatttgaatgaat |
32849100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 521
Target Start/End: Complemental strand, 44527063 - 44527002
Alignment:
| Q |
460 |
cagtttgttgcaatcttaattttctaatgatctatgtatttgtccaatttgaatgaatgaat |
521 |
Q |
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| T |
44527063 |
cagtttttagcaattttaaatttgtaatgatatatgtatttgtctaatctgaatgaatgaat |
44527002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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