View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8546_low_11 (Length: 272)
Name: NF8546_low_11
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8546_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 28173234 - 28173502
Alignment:
| Q |
4 |
tgagatggacatcaaattccagttccattctgtttttgtttgtcctgtctcaaaggaacaagcaactgaggagaaccctccaatgttgatgtcctgtggc |
103 |
Q |
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| T |
28173234 |
tgagatggacagcgaattccagttccattctgtttttgtttgtcctgtctcaaaggaacaagcaactgaggagaaccctccaatgttgatgtcctgtggc |
28173333 |
T |
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| Q |
104 |
catgtcctctgtaagcagtctatcttgaaaatgtccaagaatagcacaaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgca |
203 |
Q |
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| T |
28173334 |
catgtcctctgtaagcagtctatcttgaaaatgtccaagaatagcacaaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgca |
28173433 |
T |
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| Q |
204 |
agcaactatatttgtgattttcttgtatttgtatcaaactttcttgtatcatctgaatttcgtgttagt |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28173434 |
agcaactatatttgtgattttcttgtatttgtatcaaactttcttgtatcatctgaattacgtgttagt |
28173502 |
T |
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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 19788894 - 19789081
Alignment:
| Q |
50 |
gtctcaaaggaacaagcaactgaggagaaccctccaatgttgatgtcctgtggccatgtcctctgtaagcagtctatcttgaaaatgtccaagaatagca |
149 |
Q |
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||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||| |
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| T |
19788894 |
gtctcgaaggaacaagcaactgaggataaccatccaatgttgttgtcctgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagca |
19788993 |
T |
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| Q |
150 |
caaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgcaagcaactatatttgtgattttcttgtatttgtat |
237 |
Q |
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| T |
19788994 |
cagaagcgtttaagttcccatattgtccctttgatattgatgcagcacagtgcatgcaactatgtttgtgattttcatggatttgtat |
19789081 |
T |
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