View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8546_low_13 (Length: 239)
Name: NF8546_low_13
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8546_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26363615 - 26363395
Alignment:
| Q |
1 |
tgttttccaatgtctattacaaatttgttgtacataattataaaacaaacatcaacattgtgttcgtgaattctttttcttcaaagatttgttgaaaaga |
100 |
Q |
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| T |
26363615 |
tgttttccaatgtctattacaaatttgttatacatgattataaaagaaacatcaacattgtgttcgt--attctttttcttcaaagatttgttgaaaaga |
26363518 |
T |
|
| Q |
101 |
aggaacctctcaatgcattggtggaatttgcgatcgtgtaactggagatcacaggtttgagccatctaatcgacttcttacaaatgcaagataaggctac |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26363517 |
aggaacctctcaatgcattggtggaatttgaggtcgtgtaactggagatcacaggtttgagccatctaatcgacttcttacaaatgcaagataaggctac |
26363418 |
T |
|
| Q |
201 |
ctacaaaagacccgtaatggatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
26363417 |
ctacaaaagacccgtaatggatc |
26363395 |
T |
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