View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8546_low_3 (Length: 396)
Name: NF8546_low_3
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8546_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 173 - 394
Target Start/End: Original strand, 29245988 - 29246205
Alignment:
| Q |
173 |
agtctccttacgcattaactgtacaaaaaagtatgttctaaattttgatttcatttatttatatgctaaccaatgataacaaattgctccacactgcata |
272 |
Q |
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|||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29245988 |
agtctccttacgcatt----gtacaaaaatgtatggtctaaattttgatttcatttatttatatgctaaccaatgataacaaattgctccacactgcata |
29246083 |
T |
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| Q |
273 |
gcattcagttggatatgtgagaggggatatatactatggagcacaggctattataaacgtgtgggccccccatgttgaaagccaagatgaattcagcttg |
372 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
29246084 |
gcattcagttggatttgtgagaggggatatatactatggagcacaggctataataaacgtgtgggccccccatgttgaaagcccaaatgaattcagcttg |
29246183 |
T |
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| Q |
373 |
gctcaaatatggatcgtctctg |
394 |
Q |
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| T |
29246184 |
ggtcaaatatggatcgtctctg |
29246205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 394
Target Start/End: Original strand, 29254311 - 29254441
Alignment:
| Q |
264 |
cactgcatagcattcagttggatatgtgagaggggatatatactatggagcacaggctattataaacgtgtgggccccccatgttgaaagccaagatgaa |
363 |
Q |
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||||||| |||||||| |||| | ||||| || |||| |||| ||||||||||||||| ||||| |||||||||||||||||||||| || ||||||| |
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| T |
29254311 |
cactgcacagcattcaattgggtctgtgactggagatagataccatggagcacaggctaccataaatgtgtgggccccccatgttgaaaacctagatgaa |
29254410 |
T |
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| Q |
364 |
ttcagcttggctcaaatatggatcgtctctg |
394 |
Q |
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| T |
29254411 |
ttaagcttggcacaaatgtggatcgtctctg |
29254441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 29245824 - 29245873
Alignment:
| Q |
14 |
atggacatctggtatgcaatcatagaaacttatatattttgtctctcaaa |
63 |
Q |
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| T |
29245824 |
atggacatctggtatgcaatcatagaaacttatatattttgtctctcaaa |
29245873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 29224386 - 29224481
Alignment:
| Q |
295 |
ggggatatatactatggagcacaggctattataaacgtgtgggccccccatgttgaaagccaagatgaattcagcttggctcaaatatggatcgtc |
390 |
Q |
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|||||||| ||| |||| ||| |||||| |||| |||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||| |
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| T |
29224386 |
ggggatatctaccatggcgcaaaggctaccataagcgtgtgggccccgcatgtggaaagccctaatgaattcagcttggctcaaatgtggatcgtc |
29224481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 29364704 - 29364783
Alignment:
| Q |
308 |
atggagcacaggctattataaacgtgtgggccccccatgttgaaagccaagatgaattcagcttggctcaaatatggatc |
387 |
Q |
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| T |
29364704 |
atggagcaaaggctacaataaacgtgtgggccccccaagtggaaagtccaaatgaattcagcttggctcaaatgtggatc |
29364783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 394
Target Start/End: Complemental strand, 29213910 - 29213783
Alignment:
| Q |
267 |
tgcatagcattcagttggatatgtgagaggggatatatactatggagcacaggctattataaacgtgtgggccccccatgttgaaagccaagatgaattc |
366 |
Q |
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|||| ||||| |||||||||||||||| |||||| || ||||||||| | |||| ||||| ||||||| ||| || || ||||| | | |||||||| |
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| T |
29213910 |
tgcacagcatgcagttggatatgtgagtggggatgagtattatggagcaaaagctagcataaatgtgtgggtcccacaagtggaaagtccatatgaattc |
29213811 |
T |
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| Q |
367 |
agcttggctcaaatatggatcgtctctg |
394 |
Q |
| |
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||||| |||||||||||||| |||||| |
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| T |
29213810 |
agcttatctcaaatatggatcatctctg |
29213783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 372
Target Start/End: Complemental strand, 14496744 - 14496644
Alignment:
| Q |
272 |
agcattcagttggatatgtgagaggggatatatactatggagcacaggctattataaacgtgtgggccccccatgttgaaagccaagatgaattcagctt |
371 |
Q |
| |
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||||| ||||||||||||||| || || ||||||||||||| |||||| ||||||||||||||||| | ||| | || |||| ||||||||||||| |
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| T |
14496744 |
agcatgcagttggatatgtgactggaaatcaatactatggagcaaaggctagcataaacgtgtgggccccacgtgtagcaaaccaatatgaattcagctt |
14496645 |
T |
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| Q |
372 |
g |
372 |
Q |
| |
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| T |
14496644 |
g |
14496644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 43814619 - 43814554
Alignment:
| Q |
326 |
taaacgtgtgggccccccatgttgaaagccaagatgaattcagcttggctcaaatatggatcgtctctg |
394 |
Q |
| |
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|||||||||||||||| ||||| ||||| ||||| |||||| ||||||||||||||| || |||||| |
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| T |
43814619 |
taaacgtgtgggccccacatgtggaaagtcaaga---attcagtttggctcaaatatgggtcctctctg |
43814554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 384
Target Start/End: Complemental strand, 30928808 - 30928679
Alignment:
| Q |
255 |
attgctccacactgcatagcattcagttggatatgtgagaggggatatatactatggagcacaggctattataaacgtgtgggccccccatgttgaaagc |
354 |
Q |
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||||||| |||||||| |||||||| ||| | ||||| || ||| ||||||||||||| |||||| ||||| ||||||| || ||||| ||| |
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| T |
30928808 |
attgctctacactgcacagcattcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagat |
30928709 |
T |
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| Q |
355 |
caagatgaattcagcttggctcaaatatgg |
384 |
Q |
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|| |||||||||||||| ||||||||||| |
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| T |
30928708 |
gaaaatgaattcagcttgtctcaaatatgg |
30928679 |
T |
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