View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8546_low_5 (Length: 366)
Name: NF8546_low_5
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8546_low_5 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 111 - 358
Target Start/End: Original strand, 55857417 - 55857666
Alignment:
| Q |
111 |
ctctattactttttacaactgacgcacatctttgaagatggagcaatctaagaagatagaataaacatgct--aaacttcctaacattgaagaaaaagaa |
208 |
Q |
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| T |
55857417 |
ctctattactttttacaactgacacacatcattgaagatgaagcaatcaaagaagatagaataaacatgctctaaacttccgaacattgaagaaaaa--- |
55857513 |
T |
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| Q |
209 |
aagacaccattcagtgactgttagggtacatagaagtcaatttgaaaagtaatacaactaattaatagcaaatgtaatacagtcaaaatatgaagctca- |
307 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55857514 |
aagacaccattcactaactgttagggtacatagaagtcaatttgaaaagtaatacaactaattaatagcaaatgtaatacagtcaaaatatggagctcat |
55857613 |
T |
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| Q |
308 |
--tctatcttgctttcatcatcccacatcccaccatgttgcactttcatctca |
358 |
Q |
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| T |
55857614 |
cttctatcttgctttcatcatcccacatcccatcatattgcactttcatctca |
55857666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 55857329 - 55857393
Alignment:
| Q |
24 |
tcaatggtaccacttccacccgttgtttaatgttaatataataatgtatatttcatcttagattctt |
90 |
Q |
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| T |
55857329 |
tcaatggaaccacttccacccgttgtttaatgtta--ataataatgtatacttcatcttagattctt |
55857393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 29277265 - 29276927
Alignment:
| Q |
20 |
tagttcaatggtaccacttccacccgttgtttaatgttaatataataatgtatatttcatcttagattcttnnnnnnnnnnnnnnnnnnnnctctattac |
119 |
Q |
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| T |
29277265 |
tagttcaatggaaccacttccacccgttgtttaatgttaata--ataatgtatacttcatcttagattcttaaaaaaaaaaaaaaaa----ctctattac |
29277172 |
T |
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| Q |
120 |
tttttacaactgacgcacatctttgaagatggagcaatctaagaagatagaataaacatgctaaacttcctaacattgaagaaaaagaaaagacaccatt |
219 |
Q |
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| T |
29277171 |
tttttacaactgacacacatcattgaagatggagcaatcaaagaagatagaataaacatgctaaacttccgaacattgaagaaa---aaaagacaccatt |
29277075 |
T |
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| Q |
220 |
cagtgact-----gttagggtacatagaagtcaatttg-aaaagtaatacaactaattaatagcaaatgtaatacagtcaaaatatgaagctca---tct |
310 |
Q |
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|| | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
29277074 |
cactaactgttaggttagggtacatagaagtcaatttgaaaaagtaatacaactaattaatagcaaatgtaatacagtcaaaatatggagctcatcttct |
29276975 |
T |
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| Q |
311 |
atcttgctttcatcatcccacatcccaccatgttgcactttcatctca |
358 |
Q |
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| T |
29276974 |
atcttgctttcatcatcccacatcccatcatattgcactttcatctca |
29276927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 160 - 303
Target Start/End: Original strand, 46266694 - 46266834
Alignment:
| Q |
160 |
aagaagatagaataaacatgctaaacttcctaacattgaagaaaaagaaaagacaccattcagtgactgttagggtacatagaagtcaatttgaaaagta |
259 |
Q |
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||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||| |
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| T |
46266694 |
aagaagataaaagaaacatgctaaacttcctaaccttgaagaaaaa---aagacaccattcactaactgttagggtacatagaagtcaatttaaaaagta |
46266790 |
T |
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| Q |
260 |
atacaactaattaatagcaaatgtaatacagtcaaaatatgaag |
303 |
Q |
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| T |
46266791 |
gtacaactaattaatagcaaatgtaatatagtcaaattatgaag |
46266834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 293
Target Start/End: Complemental strand, 16702258 - 16702086
Alignment:
| Q |
114 |
tattactttttacaactgacgcacatctttgaagatggagcaatctaagaagatagaataaacatgctaaacttcctaacattgaagaaaaagaaaagac |
213 |
Q |
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|||||||||||||| ||||| ||||| | || |||||| ||||| ||| |||| |||||||||||||||||||||||| |||||||||| |||| |
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| T |
16702258 |
tattactttttacagctgac--acatcactcaaaatggagtaatctgagatgataaaataaacatgctaaacttcctaaccctgaagaaaaa----agac |
16702165 |
T |
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| Q |
214 |
accattcagtgactgttagggtacatagaagtcaatttgaaaagtaatacaactaattaatagcaaatgtaatacagtca |
293 |
Q |
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| T |
16702164 |
aatgttcactaactgttagg-tacatagaagtcattttaaaaattaatacaattaattaatagcaaatgtaataaagtca |
16702086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 46266900 - 46266947
Alignment:
| Q |
311 |
atcttgctttcatcatcccacatcccaccatgttgcactttcatctca |
358 |
Q |
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| T |
46266900 |
atcttgctttcatcatcccacatcccatcatactgcactttcatctca |
46266947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 16702013 - 16701961
Alignment:
| Q |
308 |
tctatcttgctttcatcat--cccacatcccaccatgttgcactttcatctca |
358 |
Q |
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| T |
16702013 |
tctatcttgctttcatcatatcccacatcccatcatattacactttcatctca |
16701961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 27380 - 27430
Alignment:
| Q |
308 |
tctatcttgctttcatcatcccacatcccaccatgttgcactttcatctca |
358 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
27380 |
tctatcttgctttcatcatcccacatcccatcatattgcactttcatctca |
27430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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