View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8546_low_6 (Length: 346)
Name: NF8546_low_6
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8546_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 34060488 - 34060179
Alignment:
| Q |
20 |
atccgttttgttttctgaagagtgctgctttcttacattcaactttatgagctgacaccctaactcatcaaaagaaatcacttcaccaatgtctcgaaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
34060488 |
atccgttttgttttctgaagagtgctgctttcttacattcaactttatgagctgacaccctaactcatcaaaataaatcacttcaccaatgtcgcgaaga |
34060389 |
T |
|
| Q |
120 |
caaatcgcaataccgtttcgcttcattcctaccgcctctttaatataatgtcttgatcgaattctcaaaggtgggacttttacttggcatagctcaccaa |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34060388 |
caaatcgcaataccgttttgcttcattcctaccgcctctttaatataatgtcttgatcgaattctcaaaggtgggacttttacttggcatagctcaccaa |
34060289 |
T |
|
| Q |
220 |
actctcttccacttcgttgctggcttgttgtaattctccgttctcctgtctgatgaaacctgtgtaagatcattgcaaagttgataaagttgtcgtactc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34060288 |
actctcttccacttcgttgctggcttgttgtaattctccgttctcctgtctgatgaaacctgtgtaagatcattgcaaagttgataaagttgtcgtactc |
34060189 |
T |
|
| Q |
320 |
tttggagaat |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
34060188 |
tttggagaat |
34060179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 81 - 328
Target Start/End: Original strand, 22231835 - 22232081
Alignment:
| Q |
81 |
aactcatcaaaagaaatcacttcaccaatgtctcgaagacaaatcgcaataccgtttcgcttcattcctaccgcctctttaatataatgtcttgatcgaa |
180 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||| | || ||| | |||||||||||| | ||||| |||||| |||||||||||||||||| |
|
|
| T |
22231835 |
aactcatcaaaataaatcacttctccaatgtggtgaagacaagtagctatagcttttcgcttcatttccaccgcttctttattataatgtcttgatcgaa |
22231934 |
T |
|
| Q |
181 |
ttctcaaaggtgggacttttacttggcatagctcaccaaactctcttccacttcgttgctggcttgttgtaattctccgttctcctgtctgatgaaacct |
280 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||||| |||||||||| | |||||||||||||| ||||| | ||||| |||||| ||| || |
|
|
| T |
22231935 |
ttctcaaatatgggacttttacttgacacagctcaccaaactc-cttccacttcatagctggcttgttgtagttctctgatctccattctgataaaatct |
22232033 |
T |
|
| Q |
281 |
gtgtaagatcattgcaaagttgataaagttgtcgtactctttggagaa |
328 |
Q |
| |
|
|| | ||||| |||||||||||||||| | || |||||||||| |||| |
|
|
| T |
22232034 |
gtattagatcgttgcaaagttgataaactcgtggtactctttgcagaa |
22232081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University