View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8546_low_8 (Length: 325)

Name: NF8546_low_8
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8546_low_8
NF8546_low_8
[»] scaffold0062 (10 HSPs)
scaffold0062 (19-314)||(4553-4842)
scaffold0062 (161-214)||(57927-57980)
scaffold0062 (161-214)||(70061-70114)
scaffold0062 (161-214)||(70926-70979)
scaffold0062 (151-214)||(40728-40791)
scaffold0062 (159-233)||(12334-12408)
scaffold0062 (161-214)||(3890-3943)
scaffold0062 (176-233)||(24628-24685)
scaffold0062 (176-233)||(34794-34851)
scaffold0062 (161-214)||(58815-58867)
[»] chr2 (4 HSPs)
chr2 (161-214)||(15709015-15709068)
chr2 (161-214)||(15721504-15721557)
chr2 (161-214)||(15722369-15722422)
chr2 (161-214)||(15709903-15709955)
[»] chr8 (2 HSPs)
chr8 (161-214)||(18688740-18688793)
chr8 (161-214)||(18689626-18689679)


Alignment Details
Target: scaffold0062 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 4553 - 4842
Alignment:
Q  19 aaatggagataatttgctactgaagaaagattttcgtgtgtaataatatgctaataatttttatagaaaatttcctaacttctcttggtaaatttggatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  4553 aaatggagataatttgctactgaagaaagattttcgtgtgtaataatatgctaacaatttt-atagaaaatttcctaacttctcttggtaaatttggatt 4651  T
Q  119 tgcttagaaaatatggtagctgtacatgttttgcctttacttaaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataagtct 218  Q
    |||||||||||||||||||||||      |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4652 tgcttagaaaatatggtagctgt------tttgactttacttaaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataagtct 4745  T
Q  219 aatccatgatcataacaaaataacatcagaaatgttaggaatactcatactctctctaacattaacttttttac-gggtgaaatctatctggttctt 314  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4746 aatccatgatcataacaaaataacatgagaaatgttaggaataatcatactctctctaacattaacttttttacggggtgaaatctatctggttctt 4842  T

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Target: scaffold0062; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 57927 - 57980
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  57927 aaaaactgatgattcaaattttaaattctcctaacaaccatagtgtgaacataa 57980  T

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Target: scaffold0062; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 70061 - 70114
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| |||||||||||| |||||| |||||||||||| |||||||||||||||    
T  70061 aaaaactgatgattcaaactttaaattctcctaacaaccatagtgtgaacataa 70114  T

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Target: scaffold0062; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 70926 - 70979
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| |||||||||||| |||||| |||||||||||| |||||||||||||||    
T  70926 aaaaactgatgattcaaactttaaattctcctaacaaccatagtgtgaacataa 70979  T

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Target: scaffold0062; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 40728 - 40791
Alignment:
Q  151 gcctttacttaaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||||||  ||||| ||||||| ||||||||||| |||||||||||| |||||| ||||||||    
T  40728 gcctttacacaaaaattgatgatccaaattttaaattctcctaacaaccatagtgcgaacataa 40791  T

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Target: scaffold0062; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 12408 - 12334
Alignment:
Q  159 ttaaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataagtctaatccatgatcataa 233  Q
    ||||||| |||||| | ||||||| || |||| ||||||| |||||||||| |||| ||| ||||||||||||||    
T  12408 ttaaaaattgatgaatgaaatttttaattctcttaacaaccatagtgtgaaaataactctgatccatgatcataa 12334  T

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Target: scaffold0062; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 3890 - 3943
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    |||| |||||||| ||||||||||| ||| || ||||| |||||||||||||||    
T  3890 aaaatatgatgatccaaattttaaattctactgacaaccatagtgtgaacataa 3943  T

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Target: scaffold0062; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 24685 - 24628
Alignment:
Q  176 aaattttaaactctcctaacaactatagtgtgaacataagtctaatccatgatcataa 233  Q
    ||||||| || |||| ||||||| |||||||||| |||| ||| ||||||||||||||    
T  24685 aaatttttaattctcttaacaaccatagtgtgaaaataactctgatccatgatcataa 24628  T

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Target: scaffold0062; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 34851 - 34794
Alignment:
Q  176 aaattttaaactctcctaacaactatagtgtgaacataagtctaatccatgatcataa 233  Q
    ||||||| || |||| ||||||| |||||||||| |||| ||| ||||||||||||||    
T  34851 aaatttttaattctcttaacaaccatagtgtgaaaataactctgatccatgatcataa 34794  T

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Target: scaffold0062; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 58815 - 58867
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| |||||||||||| || ||| |||||||||||| |||||||||||||||    
T  58815 aaaaactgatgattcaaactt-aaattctcctaacaaccatagtgtgaacataa 58867  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 15709015 - 15709068
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  15709015 aaaaactgatgattcaaattttaaattctcctaacaaccatagtgtgaacataa 15709068  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 15721504 - 15721557
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| |||||||||||| |||||| |||||||||||| |||||||||||||||    
T  15721504 aaaaactgatgattcaaactttaaattctcctaacaaccatagtgtgaacataa 15721557  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 15722369 - 15722422
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| |||||||||||| |||||| |||||||||||| |||||||||||||||    
T  15722369 aaaaactgatgattcaaactttaaattctcctaacaaccatagtgtgaacataa 15722422  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 15709903 - 15709955
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| |||||||||||| || ||| |||||||||||| |||||||||||||||    
T  15709903 aaaaactgatgattcaaactt-aaattctcctaacaaccatagtgtgaacataa 15709955  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 18688740 - 18688793
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| |||||||||||| |||||| |||||||||||| |||||||||||||||    
T  18688740 aaaaactgatgattcaaactttaaattctcctaacaaccatagtgtgaacataa 18688793  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 18689626 - 18689679
Alignment:
Q  161 aaaaaatgatgattcaaattttaaactctcctaacaactatagtgtgaacataa 214  Q
    ||||| |||||||||||| |||||| |||||||||||| |||||||||||||||    
T  18689626 aaaaactgatgattcaaactttaaattctcctaacaaccatagtgtgaacataa 18689679  T

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