View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8546_low_9 (Length: 284)
Name: NF8546_low_9
Description: NF8546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8546_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 6324963 - 6325192
Alignment:
| Q |
24 |
caaatttcaatgttattactcgaaaaataatcttcgagctctagtatttaaagtagaatcattcttttaatattggtctttgaggaaaatcaaattaact |
123 |
Q |
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| T |
6324963 |
caaatttcaatgttattactcgaaaaataatcttcgagctctagtatttaaagtagaatcattcttttaatattggtctttgaggaaaattaaattaact |
6325062 |
T |
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| Q |
124 |
gactcaaaatcgtttactctaatgttacatgtaaca-ttttttatatcagcttagtaaaaagaaaaccatgcaaatcaatcatttttaaaaagcattttc |
222 |
Q |
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| T |
6325063 |
tactcaaaatcgtttactctagtgttacatgtaacatttttttatatcagcttagtaaaaagaaaaccatgcaaatcaatcatttttaaaaagcattttc |
6325162 |
T |
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| Q |
223 |
ttaattgagaatgtttaaaagtacatttaa |
252 |
Q |
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| T |
6325163 |
ttaattgagaatgtttaaaagtacatttaa |
6325192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 6330147 - 6330226
Alignment:
| Q |
53 |
atcttcgagctctagtatttaaagtagaatcattcttttaatattggtctttgaggaaaatcaaattaactgactcaaaa |
132 |
Q |
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|||||||| ||||||||||| ||||| || | ||||||||||||| |||||||||||||| || |||||| ||||||| |
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| T |
6330147 |
atcttcgatctctagtatttgaagtaaaaccgttcttttaatattaatctttgaggaaaataaacttaactccctcaaaa |
6330226 |
T |
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