View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8547_high_1 (Length: 382)

Name: NF8547_high_1
Description: NF8547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8547_high_1
NF8547_high_1
[»] chr7 (7 HSPs)
chr7 (18-366)||(17734406-17734754)
chr7 (18-356)||(17743656-17743994)
chr7 (18-358)||(16720430-16720770)
chr7 (18-358)||(17697444-17697784)
chr7 (18-358)||(17716363-17716703)
chr7 (18-358)||(16729303-16729643)
chr7 (18-358)||(17706375-17706715)
[»] chr8 (1 HSPs)
chr8 (22-133)||(21465819-21465930)
[»] chr4 (1 HSPs)
chr4 (18-67)||(37147601-37147650)
[»] chr3 (4 HSPs)
chr3 (18-70)||(47398190-47398242)
chr3 (19-70)||(5155454-5155505)
chr3 (19-69)||(46543301-46543351)
chr3 (27-133)||(46550164-46550270)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 17734754 - 17734406
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacaga 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17734754 gtttgaaggaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacaga 17734655  T
Q  118 agaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtg 217  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  17734654 agaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggcagtg 17734555  T
Q  218 atcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  17734554 atcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgttcagagaaa 17734455  T
Q  318 cgttggtgaggttggtcagtgattttccgatgagattctgctctgatgt 366  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17734454 cgttggtgaggtttgtcagtgattttccgatgagattctgctctgatgt 17734406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 17743994 - 17743656
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacaga 117  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||| ||  |||| || ||||||||||||||    
T  17743994 gtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacgtaagacaagcaagggccaccagcacgagccccgtcggagagcacaga 17743895  T
Q  118 agaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtg 217  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |    
T  17743894 agaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcg 17743795  T
Q  218 atcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  17743794 atcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgttcagagaaa 17743695  T
Q  318 cgttggtgaggttggtcagtgattttccgatgagattct 356  Q
    |||||||||  ||||| ||||||||||||||||||||||    
T  17743694 cgttggtgaatttggtgagtgattttccgatgagattct 17743656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 16720770 - 16720430
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacaga 117  Q
    |||||||| ||||||||||||||| ||  ||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||    
T  16720770 gtttgaaggaaggttgaagaggaattgtctgttcaacccacacaccattgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacaga 16720671  T
Q  118 agaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtg 217  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||||||||||||||||      
T  16720670 agaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagca 16720571  T
Q  218 atcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaa 317  Q
    |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||  ||||    
T  16720570 atcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaa 16720471  T
Q  318 cgttggtgaggttggtcagtgattttccgatgagattctgc 358  Q
     |||||| ||||| || | ||||||||||||||||||||||    
T  16720470 tgttggttaggtttgtaaatgattttccgatgagattctgc 16720430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 17697784 - 17697444
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacaga 117  Q
    |||||||| ||||||||||||||| ||  ||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||    
T  17697784 gtttgaaggaaggttgaagaggaattgtctgttcaacccacacaccattgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacaga 17697685  T
Q  118 agaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtg 217  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||||||||||||||||      
T  17697684 agaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagca 17697585  T
Q  218 atcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaa 317  Q
    |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||  ||||    
T  17697584 atcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaa 17697485  T
Q  318 cgttggtgaggttggtcagtgattttccgatgagattctgc 358  Q
     |||||| ||||| || | ||||||||||||||||||||||    
T  17697484 tgttggttaggtttgtaaatgattttccgatgagattctgc 17697444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 17716703 - 17716363
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacaga 117  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||    
T  17716703 gtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccattgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacaga 17716604  T
Q  118 agaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtg 217  Q
    |||||| ||| ||||| ||||||||||||||| ||||  |||||| |||||||||||| |||||||||| ||||| | |||||||||||||||||||| |    
T  17716603 agaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggagccggtagcg 17716504  T
Q  218 atcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaa 317  Q
    |||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||  ||||    
T  17716503 atcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaa 17716404  T
Q  318 cgttggtgaggttggtcagtgattttccgatgagattctgc 358  Q
    ||||||| ||||| || |||||||||| |||||||||||||    
T  17716403 cgttggttaggtttgtgagtgattttctgatgagattctgc 17716363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 16729643 - 16729303
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacaga 117  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||| ||||||||||||||||||    
T  16729643 gtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccattgacgtaagacaagcaagggccaccagcgggagtgccatcggagagcacaga 16729544  T
Q  118 agaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtg 217  Q
    |||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||| | |||||||| ||||| ||||| |    
T  16729543 agaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcg 16729444  T
Q  218 atcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaa 317  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||  ||||    
T  16729443 atcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaa 16729344  T
Q  318 cgttggtgaggttggtcagtgattttccgatgagattctgc 358  Q
    ||||||| ||||| || |||||||||| |||||||||||||    
T  16729343 cgttggttaggtttgtgagtgattttctgatgagattctgc 16729303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 17706715 - 17706375
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacaga 117  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||| ||||||||||||||||||    
T  17706715 gtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccattgacgtaagacaagcaagggccaccagcgggagtgccatcggagagcacaga 17706616  T
Q  118 agaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtg 217  Q
    |||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||| | |||||||| ||||| ||||| |    
T  17706615 agaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcg 17706516  T
Q  218 atcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaa 317  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||  ||||    
T  17706515 atcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaa 17706416  T
Q  318 cgttggtgaggttggtcagtgattttccgatgagattctgc 358  Q
    ||||||| ||||| || |||||||||| |||||||||||||    
T  17706415 cgttggttaggtttgtgagtgattttctgatgagattctgc 17706375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 21465819 - 21465930
Alignment:
Q  22 gaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaa 121  Q
    |||| |||||||||||| |||||||||||||||||||| ||||||||||  || || |  ||| || || ||||||||  ||   ||||||||||| |||    
T  21465819 gaaggaaggttgaagagaaagtgattgttcaacccacataccattgacgaaagccaagtgaggtccgccagcgggagcagcactagagagcacagaggaa 21465918  T
Q  122 acaagctgagag 133  Q
    ||||||||||||    
T  21465919 acaagctgagag 21465930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 37147650 - 37147601
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattg 67  Q
    |||||||| || ||||||||| |||||||||||||| |||||||||||||    
T  37147650 gtttgaaggaatgttgaagagaaagtgattgttcaatccacacaccattg 37147601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 47398190 - 47398242
Alignment:
Q  18 gtttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacg 70  Q
    |||||||| |||||||||||| ||| | ||||||||||||||| |||||||||    
T  47398190 gtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacg 47398242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 5155505 - 5155454
Alignment:
Q  19 tttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgacg 70  Q
    ||||||| |||||||||||| ||| | |||||||||||| ||||||||||||    
T  5155505 tttgaaggaaggttgaagagaaagggtttgttcaacccatacaccattgacg 5155454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 46543351 - 46543301
Alignment:
Q  19 tttgaagcaaggttgaagaggaagtgattgttcaacccacacaccattgac 69  Q
    ||||||| || |||||| || |||||||||||||||||| |||||||||||    
T  46543351 tttgaaggaatgttgaaaagtaagtgattgttcaacccatacaccattgac 46543301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 46550164 - 46550270
Alignment:
Q  27 aaggttgaagaggaagtgattgttcaacccacacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaag 126  Q
    |||||||||||| ||| | |||||||| |||| |||||||||||  ||| |||||||| |  ||   ||||||  |||| |||| |||||||||||||||    
T  46550164 aaggttgaagagaaagggtttgttcaatccacgcaccattgacgaaagagaggcaaggcctgccaaggggagcagcatcagagaacacagaagaaacaag 46550263  T
Q  127 ctgagag 133  Q
     ||||||    
T  46550264 ttgagag 46550270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University