View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8547_high_5 (Length: 220)
Name: NF8547_high_5
Description: NF8547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8547_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 35782402 - 35782621
Alignment:
| Q |
1 |
ctcatcaggtatagttcctccaagattgttgtgagaggcaatgaaggtttgaagggttggaatagaaagaatttctgaaggtagagatgactcaaggtgg |
100 |
Q |
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| T |
35782402 |
ctcatcaggtatagttcctccaagattgttgtgagaggcaatgaaggtttgaagggttggaatagaaagaatttctgaaggtagagatgactcaaggtgg |
35782501 |
T |
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| Q |
101 |
ttccaagatacatcaatgaaggaaagtgatgtggaagaggtgatatctataggaatttgaccagtgaggttgttcttcgccaactccagccgttgaaggc |
200 |
Q |
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| T |
35782502 |
ttccaagatacatcaatgaaggaaagtgatgtggaagaggtgatatctataggaatttgaccagtgaagttgttcttcgccaactccagccgttgaaggc |
35782601 |
T |
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| Q |
201 |
tcggaagactgccaaatcca |
220 |
Q |
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|| |||| |||||||||||| |
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| T |
35782602 |
tcagaaggctgccaaatcca |
35782621 |
T |
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