View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8547_low_11 (Length: 229)

Name: NF8547_low_11
Description: NF8547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8547_low_11
NF8547_low_11
[»] chr1 (3 HSPs)
chr1 (95-229)||(3144156-3144290)
chr1 (1-43)||(21444802-21444844)
chr1 (3-102)||(42267304-42267405)
[»] chr2 (4 HSPs)
chr2 (1-100)||(11689544-11689645)
chr2 (1-100)||(11721414-11721515)
chr2 (1-51)||(11689762-11689812)
chr2 (1-51)||(11721247-11721297)
[»] chr8 (2 HSPs)
chr8 (1-102)||(11291028-11291131)
chr8 (1-100)||(22890101-22890201)
[»] chr4 (4 HSPs)
chr4 (1-102)||(11857893-11857996)
chr4 (1-51)||(7280263-7280313)
chr4 (1-51)||(7280430-7280480)
chr4 (1-43)||(11858113-11858155)
[»] scaffold0181 (1 HSPs)
scaffold0181 (1-43)||(9427-9469)
[»] chr6 (2 HSPs)
chr6 (1-44)||(33648629-33648672)
chr6 (1-43)||(1215069-1215111)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-43)||(31082-31124)
[»] chr3 (2 HSPs)
chr3 (1-51)||(14633906-14633956)
chr3 (1-43)||(30380908-30380950)
[»] chr7 (1 HSPs)
chr7 (1-92)||(15714407-15714499)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 3144156 - 3144290
Alignment:
Q  95 ataaaagcagtatacaatgtatatttgtagttgtatctatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 194  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144156 ataaaagcagtatagaatgtatatttgtagttgtatacatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 3144255  T
Q  195 aaagtgtgtttggctcagaatagagaatagaaaga 229  Q
    |||||||||||||||||||||||||||||||||||    
T  3144256 aaagtgtgtttggctcagaatagagaatagaaaga 3144290  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21444802 - 21444844
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 43  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  21444802 ttttaagtgattaaattttgacacggcaaaatgccaggattaa 21444844  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 42267405 - 42267304
Alignment:
Q  3 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtataaaa 100  Q
    |||| ||||||||||||| || |||||| || |||||||||||| ||||  || ||| |||||||||||| ||| ||  ||||| ||||||| |||||||    
T  42267405 ttaaatgattaaattttggcaggacaaattgtcaggattaaagaatacagggaccaatttttaaatgacccctatttgcagggaataaacacatataaaa 42267306  T
Q  101 gc 102  Q
    ||    
T  42267305 gc 42267304  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11689645 - 11689544
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtataa 98  Q
    |||||||||||||||||||| || ||||||||||| |||||||||| ||||  |||||| |||||||||||| ||| ||  | ||||||||||| |||||    
T  11689645 ttttaagtgattaaattttggcaggacaaaatgccgggattaaagaatacagggatcaatttttaaatgacccctatttccaaggactaaacacatataa 11689546  T
Q  99 aa 100  Q
    ||    
T  11689545 aa 11689544  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 11721414 - 11721515
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtataa 98  Q
    |||||||||||||||||||| || || |||||| |||||||||||| ||||  |||||| |||||||||||| ||| ||  |  |||||||||| |||||    
T  11721414 ttttaagtgattaaattttggcaggataaaatgtcaggattaaagaatacagggatcaatttttaaatgacccctatttccaaagactaaacacatataa 11721513  T
Q  99 aa 100  Q
    ||    
T  11721514 aa 11721515  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11689762 - 11689812
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 51  Q
    |||||||||||||||||||| || |||||| ||| ||||||||||| ||||    
T  11689762 ttttaagtgattaaattttggcaggacaaattgctaggattaaagaataca 11689812  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11721297 - 11721247
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 51  Q
    |||||||||||||||||||| || | |||||||| ||||||||||| ||||    
T  11721297 ttttaagtgattaaattttggcagggcaaaatgctaggattaaagaataca 11721247  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 11291131 - 11291028
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataa 98  Q
    |||||||||||||||||||| |||| ||||||  ||||||||| || |||| || | |  |||||||||||  ||| || |||| |||||||||||||||    
T  11291131 ttttaagtgattaaattttggcatggcaaaatatcaggattaaggaatacaagaaccattttttaaatgactcctatttgtaggaactaaacacgtataa 11291032  T
Q  99 aagc 102  Q
    ||||    
T  11291031 aagc 11291028  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22890201 - 22890101
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatca-attttaaatgacctctagttttagggactaaacacgtataaa 99  Q
    ||||||||||||||||||||||  ||||||||| || |||||| || |||| || ||  |||||||||||| ||| ||   |||||||||||| ||||||    
T  22890201 ttttaagtgattaaattttgacgggacaaaatgtcatgattaaggaatacaagaccattttttaaatgacccctatttaccgggactaaacacatataaa 22890102  T
Q  100 a 100  Q
    |    
T  22890101 a 22890101  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 11857996 - 11857893
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataa 98  Q
    |||||||||||||||||||| ||   ||||||||||||||||| || |||| |  | |  |||||||||||||||| ||  ||||||||||||| |||||    
T  11857996 ttttaagtgattaaattttggcagagcaaaatgccaggattaaggaatacagggaccattttttaaatgacctctatttgcagggactaaacacatataa 11857897  T
Q  99 aagc 102  Q
    ||||    
T  11857896 aagc 11857893  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7280313 - 7280263
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 51  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||| ||||    
T  7280313 ttttaagtgattaaattttgacagggcaaaatgacaggattaaagaataca 7280263  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7280430 - 7280480
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 51  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||| ||||    
T  7280430 ttttaagtgattaaattttgacatggcaaaatgtcagaattaaagaataca 7280480  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11858113 - 11858155
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 43  Q
    ||||||||||||||||||||||| |  ||||||||||||||||    
T  11858113 ttttaagtgattaaattttgacagggtaaaatgccaggattaa 11858155  T

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Target: scaffold0181 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9427 - 9469
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 43  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  9427 ttttaagtgattaaattttgacaggacaaaataccaggattaa 9469  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33648672 - 33648629
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaa 44  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||    
T  33648672 ttttaagtgattaaattttcacatgacaaaataccatgattaaa 33648629  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1215111 - 1215069
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 43  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  1215111 ttttaagtgattaaattttgacagggcaaaatgtcaggattaa 1215069  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31124 - 31082
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 43  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  31124 ttttaagtgattaaattttgacaggacaaattgccagaattaa 31082  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14633956 - 14633906
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 51  Q
    ||||||||||||||||||||  | ||||||||| |||||||||||| ||||    
T  14633956 ttttaagtgattaaattttggtaggacaaaatgtcaggattaaagaataca 14633906  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30380950 - 30380908
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 43  Q
    |||||| |||||||||||||||||||||||||  |||||||||    
T  30380950 ttttaaatgattaaattttgacatgacaaaatatcaggattaa 30380908  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 15714499 - 15714407
Alignment:
Q  1 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacg-atcaattttaaatgacctctagttttagggactaaacac 92  Q
    ||||||||||| |||||||| || | ||||||||||||||||| || |||| | | || ||||||||||||  || ||  |||||||||||||    
T  15714499 ttttaagtgatgaaattttggcagggcaaaatgccaggattaaggaatacatgaaccatttttaaatgacccatatttgcagggactaaacac 15714407  T

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