View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8547_low_2 (Length: 344)
Name: NF8547_low_2
Description: NF8547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8547_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 30377198 - 30376878
Alignment:
| Q |
1 |
gataggttgcactattttctggttgtcttcgtttctttaaacatgatctctttttgatgaagagattttcagagaatcatgtcatcaaagctttacgact |
100 |
Q |
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| T |
30377198 |
gataggttgcactattttctggttgtcttcgtttctttaaacatgatctctttttgatgaagagattttcagagaatcatgtcatcaaagctttacgact |
30377099 |
T |
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| Q |
101 |
tgatcttcaattcgatccattcagaggattgttgtatccgcggaattggcttagactggcatccgagcaaattatccagaagattagcttaggccagacg |
200 |
Q |
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| T |
30377098 |
tgatcttcaattcgatccattcagaggattgttgtatccgcggaattggcttagactggcatccgagcaaattatccagaagattagcttaggccagacg |
30376999 |
T |
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| Q |
201 |
attgatatatttgaatttcttatgaacgagccaaacttagaccttaattaatattttgacataccaaacatggtcttgaaaaacctaaccaacgtattct |
300 |
Q |
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| T |
30376998 |
attgatatatttgaatttcttatgaacgagccaaacttagaccttaattaatattttgacagaccaaacttggtcttgaaaaacctaaccaacgtattct |
30376899 |
T |
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| Q |
301 |
cacttctggtacaacaaatgt |
321 |
Q |
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| T |
30376898 |
cacttctggtacaacaaatgt |
30376878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 30374392 - 30374356
Alignment:
| Q |
230 |
gccaaacttagaccttaattaatattttgacatacca |
266 |
Q |
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|||||| ||||||||||||||||||||||||| |||| |
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| T |
30374392 |
gccaaatttagaccttaattaatattttgacagacca |
30374356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 10920650 - 10920700
Alignment:
| Q |
89 |
agctttacgacttgatcttcaattcgatccattcagaggattgttgtatcc |
139 |
Q |
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| T |
10920650 |
agctttatgacttgatcttcaatttgatccatttagaggatcgtcgtatcc |
10920700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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