View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8547_low_5 (Length: 289)
Name: NF8547_low_5
Description: NF8547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8547_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 78 - 281
Target Start/End: Complemental strand, 3144501 - 3144298
Alignment:
| Q |
78 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
177 |
Q |
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| T |
3144501 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
3144402 |
T |
|
| Q |
178 |
cgccttatttgcttaaaaccaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc |
277 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3144401 |
cgccttatttgcttaaaactaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc |
3144302 |
T |
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| Q |
278 |
tgct |
281 |
Q |
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|||| |
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| T |
3144301 |
tgct |
3144298 |
T |
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