View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8547_low_7 (Length: 273)
Name: NF8547_low_7
Description: NF8547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8547_low_7 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 32 - 264
Target Start/End: Complemental strand, 11798093 - 11797861
Alignment:
| Q |
32 |
ctaaaaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcaccta |
131 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
11798093 |
ctaaaaaagtgaagaattgaactaaccataatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaa |
11797994 |
T |
|
| Q |
132 |
acaggggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaatt |
231 |
Q |
| |
|
| || ||||| |||| |||||||||| |||||| ||| ||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11797993 |
agagaggaagtagagaagcagttccaacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaatt |
11797894 |
T |
|
| Q |
232 |
cccctgaatcccataaaatgatatcctctctgc |
264 |
Q |
| |
|
||| ||||| |||||| |||||| ||||||||| |
|
|
| T |
11797893 |
cccttgaattccataatatgataccctctctgc |
11797861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 264
Target Start/End: Complemental strand, 11702031 - 11701817
Alignment:
| Q |
50 |
gaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcag |
149 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| |||| || |
|
|
| T |
11702031 |
gaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaag |
11701932 |
T |
|
| Q |
150 |
cagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaa |
249 |
Q |
| |
|
| ||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
11701931 |
ctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataata |
11701832 |
T |
|
| Q |
250 |
tgatatcctctctgc |
264 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
11701831 |
tgataccctctctgc |
11701817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 55 - 264
Target Start/End: Complemental strand, 11696229 - 11696020
Alignment:
| Q |
55 |
aaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagtt |
154 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||| ||||||| |
|
|
| T |
11696229 |
aaccaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagtt |
11696130 |
T |
|
| Q |
155 |
ccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgata |
254 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
11696129 |
ccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatg |
11696030 |
T |
|
| Q |
255 |
tcctctctgc |
264 |
Q |
| |
|
||||||||| |
|
|
| T |
11696029 |
ccctctctgc |
11696020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 56 - 264
Target Start/End: Complemental strand, 11676132 - 11675924
Alignment:
| Q |
56 |
accaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttc |
155 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||| |||| || |
|
|
| T |
11676132 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11676033 |
T |
|
| Q |
156 |
cagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatat |
255 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
11676032 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac |
11675933 |
T |
|
| Q |
256 |
cctctctgc |
264 |
Q |
| |
|
||||||||| |
|
|
| T |
11675932 |
cctctctgc |
11675924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 56 - 264
Target Start/End: Complemental strand, 11684411 - 11684203
Alignment:
| Q |
56 |
accaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttc |
155 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||| |||| || |
|
|
| T |
11684411 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11684312 |
T |
|
| Q |
156 |
cagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatat |
255 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
11684311 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac |
11684212 |
T |
|
| Q |
256 |
cctctctgc |
264 |
Q |
| |
|
||||||||| |
|
|
| T |
11684211 |
cctctctgc |
11684203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 264
Target Start/End: Complemental strand, 11779227 - 11778999
Alignment:
| Q |
36 |
aaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacag |
135 |
Q |
| |
|
|||||||||||| |||| |||||| | |||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||| || || |
|
|
| T |
11779227 |
aaaagtgaagaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagag |
11779128 |
T |
|
| Q |
136 |
gggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccc |
235 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
11779127 |
aggaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaagtttccc |
11779028 |
T |
|
| Q |
236 |
tgaatcccataaaatgatatcctctctgc |
264 |
Q |
| |
|
| || |||| || |||| ||||||||||| |
|
|
| T |
11779027 |
ttaaccccaaaatatgacatcctctctgc |
11778999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 11786185 - 11786155
Alignment:
| Q |
5 |
ttttgttaaggagataattctacaatactaa |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11786185 |
ttttgttaaggagataattctacaatactaa |
11786155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 11798352 - 11798322
Alignment:
| Q |
5 |
ttttgttaaggagataattctacaatactaa |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11798352 |
ttttgttaaggagataattctacaatactaa |
11798322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 36 - 265
Target Start/End: Complemental strand, 16690 - 16461
Alignment:
| Q |
36 |
aaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacag |
135 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| || |
|
|
| T |
16690 |
aaaagtgaagaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagag |
16591 |
T |
|
| Q |
136 |
gggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccc |
235 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
16590 |
aggaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttccc |
16491 |
T |
|
| Q |
236 |
tgaatcccataaaatgatatcctctctgct |
265 |
Q |
| |
|
| ||||||| | ||||||||||||||||| |
|
|
| T |
16490 |
ttaatcccaatatatgatatcctctctgct |
16461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University