View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8547_low_8 (Length: 246)
Name: NF8547_low_8
Description: NF8547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8547_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 11786416 - 11786189
Alignment:
| Q |
24 |
gttccatggatggaggggatgccattaaagtacaaatatctggaattgtttatcttatcagatgnnnnnnnn--cactcttctctatgcatgttacataa |
121 |
Q |
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| T |
11786416 |
gttccatggatggaggggatgccattaaagtacaaatatctggaattgttcatcttatcagatgaaaaaaaaaacactcttctctatgcatgttacatat |
11786317 |
T |
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| Q |
122 |
tcctaagaaaattgctcttctcgcaacaaatat---tcactcccaactaaaaagacaaaagtacccttgcataacttaagtctttcatcatgaataactt |
218 |
Q |
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| T |
11786316 |
tcctaagaaaattgctcttcttgcaacaaatatttctcactcccaactgaaaagacaaaaatacccttgcgtaacttaaatctttcggtctgagtaactt |
11786217 |
T |
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| Q |
219 |
ttataataataaagtgataatgctacaa |
246 |
Q |
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| T |
11786216 |
ttatagttatagagtgataatgctacaa |
11786189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 11798583 - 11798356
Alignment:
| Q |
24 |
gttccatggatggaggggatgccattaaagtacaaatatctggaattgtttatcttatcagatgnnnnnnnn--cactcttctctatgcatgttacataa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
11798583 |
gttccatggatggaggggatgccattaaagtacaaatatctggaattgttcatcttatcagatgaaaaaaaaaacactcttctctatgcatgttacatat |
11798484 |
T |
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| Q |
122 |
tcctaagaaaattgctcttctcgcaacaaatat---tcactcccaactaaaaagacaaaagtacccttgcataacttaagtctttcatcatgaataactt |
218 |
Q |
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| T |
11798483 |
tcctaagaaaattgctcttcttgcaacaaatatttctcactcccaactgaaaagacaaaaatacccttgcgtaacttaaatctttcggtctgagtaactt |
11798384 |
T |
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| Q |
219 |
ttataataataaagtgataatgctacaa |
246 |
Q |
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| T |
11798383 |
ttatagttatagagtgataatgctacaa |
11798356 |
T |
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