View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_high_15 (Length: 346)
Name: NF8548A_high_15
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 28 - 333
Target Start/End: Complemental strand, 31557330 - 31557026
Alignment:
| Q |
28 |
ataagcaactgaagagtgcagtgtaactcaacataacattaattagatcagcaataatnnnnnnnctaatcatgtacctgccatctccatggattgaagg |
127 |
Q |
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| T |
31557330 |
ataagcaactgaagagtgtagtgtaactcaacataacattaattagatcagcaataataaaaaa-ctaatcatgtacctgccatctccatggattgaagg |
31557232 |
T |
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| Q |
128 |
tgcgagcatctttgaaatgttcaggattcaaatgcacagcacgaaatgatgcaatcaccttcattcccttaggaattgtgtaacctattattacaaagtg |
227 |
Q |
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| T |
31557231 |
tgcgagcatctttgaaatgttcaggattcaaatgcacagcacgaaatgatgcaatcaccttcattcccttaggaattgtgtaacctattattacaaagtg |
31557132 |
T |
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| Q |
228 |
gggcattgtaaattgacatgtgctttgtctattatatgatataatattattgactatatagtcaatacagttttattttcttatagtaccttttatgtcg |
327 |
Q |
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| T |
31557131 |
gggcattgtaaattgacatgtgctttgtctattatatgatataatattattgactatatagtcaatacagttttattttcttatagtaccttttatgtcg |
31557032 |
T |
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| Q |
328 |
atgtct |
333 |
Q |
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|||||| |
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| T |
31557031 |
atgtct |
31557026 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 35479046 - 35478967
Alignment:
| Q |
102 |
tacctgccatctccatggattgaaggtgcgagcatctttgaaatgttcaggattcaaatgcacagcacgaaatgatgcaa |
181 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| || || || | ||| || |||||||||||||||| |
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| T |
35479046 |
tacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggcacgaaatgatgcaa |
35478967 |
T |
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