View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_high_2 (Length: 552)
Name: NF8548A_high_2
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 11 - 517
Target Start/End: Original strand, 21469222 - 21469730
Alignment:
| Q |
11 |
gatgaaagagattaaacaggagagagatgaatgtgtgaaagttttcgatggatcttctacaaatgatcaacatgaaagtaatcgttctaacgaagaacaa |
110 |
Q |
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| T |
21469222 |
gatgaaagagattaaacaggagagagatgaatgtgtgaaagttttcgatggatcttctacaaatgatcaacatgaaagtaatcgttctaacgaagaacaa |
21469321 |
T |
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| Q |
111 |
gtcgaagggatgaaacattcatgtccaacatcaagcagcagcaacacaaatatgaaattgcattactcttctaatagttctacaacactaaagtaacttt |
210 |
Q |
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| T |
21469322 |
gtcgaagggatgaaacattcatgtccaacatcaagcagcagcaacacaaatatgaaattgcattactcttctaatagttctacaacactaaagtaacttt |
21469421 |
T |
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| Q |
211 |
gaaatagttaataacagcaatgtgactagggaactagaatttcttagcatgagtgatttggtttctatttgattttaagtgcttcagcttcattattatt |
310 |
Q |
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| T |
21469422 |
gaaatagttaataacagcaatgtgactagggaactagaatttcttagcatgagtgatttggtttctatttgattttaagtgcttcagcttcataattatg |
21469521 |
T |
|
| Q |
311 |
gtttgattgtgtataaggatattttagttttaataattgtgagatttgaagtaatctttcttcattactttttcttttcttgcaaactatatcaaggagg |
410 |
Q |
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| T |
21469522 |
gtttgattgtgtataaggatattttagttttaataattgtgagatttgaagtaatctttcttcattactttttcttttcttgcaaactatatcaaggagg |
21469621 |
T |
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| Q |
411 |
atatttaaacctttatgatctcat--tatatatgtaagagtgcagttagctcaagtgccaagatatatcttaacttcctaaggggtttgatccatatact |
508 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21469622 |
atatataaacctttatgatctcattatatatatgtaagagtgcagttagctcaagtgccaagatatatcttaacttcataaggggtttgatccatatact |
21469721 |
T |
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| Q |
509 |
atttaaatc |
517 |
Q |
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| T |
21469722 |
atttaaatc |
21469730 |
T |
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