View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_high_24 (Length: 255)

Name: NF8548A_high_24
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_high_24
NF8548A_high_24
[»] chr4 (12 HSPs)
chr4 (25-245)||(4025194-4025414)
chr4 (27-245)||(4009966-4010184)
chr4 (25-245)||(4002267-4002487)
chr4 (33-245)||(3801562-3801774)
chr4 (33-245)||(3954360-3954555)
chr4 (25-244)||(3809984-3810203)
chr4 (25-245)||(3986963-3987183)
chr4 (33-245)||(4218619-4218831)
chr4 (130-245)||(3817657-3817772)
chr4 (130-245)||(3919692-3919807)
chr4 (130-245)||(3932916-3933031)
chr4 (190-245)||(3963212-3963267)
[»] chr5 (1 HSPs)
chr5 (25-240)||(13397918-13398133)
[»] scaffold1360 (1 HSPs)
scaffold1360 (189-245)||(1911-1967)
[»] chr8 (2 HSPs)
chr8 (190-241)||(7069135-7069186)
chr8 (190-245)||(7075641-7075696)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 4025194 - 4025414
Alignment:
Q  25 aatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025194 aatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 4025293  T
Q  125 aattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025294 aattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 4025393  T
Q  225 taccccaaattccaataacac 245  Q
    |||||||||||||||||||||    
T  4025394 taccccaaattccaataacac 4025414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 4009966 - 4010184
Alignment:
Q  27 tataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaa 126  Q
    ||||| |||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4009966 tataattagacaacccatttggcgaacggattttcacatcttctgctaatagtgtagaaaaaagtttttctttcaaaaatgttcttccatgtcttcctaa 4010065  T
Q  127 ttcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccata 226  Q
    ||  || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||||||     
T  4010066 ttgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaattttggttaaaaatttctcctgcaatagttgtcttgccaatacttcccatg 4010165  T
Q  227 ccccaaattccaataacac 245  Q
    |||||||||||||| ||||    
T  4010166 ccccaaattccaatgacac 4010184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 4002267 - 4002487
Alignment:
Q  25 aatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 124  Q
    ||||||| |||||| ||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||    
T  4002267 aatataattagacagcccatttggtgaattaattttcacatcttctgctaatagtgtagaaaaaagcttttcttttaaaaatgttattccatgccttcct 4002366  T
Q  125 aattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 224  Q
     ||||||||||||||||| ||||||||||| |||||||||||||||||||| || | ||||||| |||||| ||||||||||||||||||||||||||||    
T  4002367 gattcttcacttaccttttccaaaaaacaaaaaccttcatattcagagcaacttcggttaaaaacttcttcagcaatagttgtcttgccaatacctccca 4002466  T
Q  225 taccccaaattccaataacac 245  Q
    |||||||||||||||| ||||    
T  4002467 taccccaaattccaatgacac 4002487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 3801562 - 3801774
Alignment:
Q  33 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttc 132  Q
    |||||||||||||||||||||||||||||||||||||   ||||||  |||||||||| ||||||||  ||| |||||||||| | |||||||||||       
T  3801562 tagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttctttttaaattgttattccacgccttcctaattccaa 3801661  T
Q  133 acttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaa 232  Q
    ||| || |||| || |||||||||||| ||||||||| ||| |||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  3801662 actcacatttgacataaaacaacaaccatcatattcaaagcgattttggttaaatatttcttctgcaatagttgtcttgccaataccgcccataccccaa 3801761  T
Q  233 attccaataacac 245  Q
    |||||||||||||    
T  3801762 attccaataacac 3801774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 33 - 245
Target Start/End: Complemental strand, 3954555 - 3954360
Alignment:
Q  33 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttc 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||                 | || ||||||||||| ||    
T  3954555 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtgttgaaaaaagctgttc-----------------cgtgccttcctaattcgtc 3954473  T
Q  133 acttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaa 232  Q
    ||| ||||||||||||||||||||||||||||||||||||||| || | ||| ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  3954472 actcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagcaatagttgtcttgccaatacctcccataccccaa 3954373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 3809984 - 3810203
Alignment:
Q  25 aatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 124  Q
    ||||| ||||| ||||| |||||||| ||| ||||||||||||||||| |||||| ||||||||||||| | ||| ||| |    ||||||||||||  |    
T  3809984 aatatcactaggcaaccaatttggtgtatcaattttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgtt 3810083  T
Q  125 aattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 224  Q
    || ||||||||||||||| |||| ||||||||||| ||||||||||| ||| |||| | ||| | |||||  ||||||||||||||||||||||| ||||    
T  3810084 aactcttcacttaccttttccaagaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccaccca 3810183  T
Q  225 taccccaaattccaataaca 244  Q
    ||||||||||||| ||||||    
T  3810184 taccccaaattccgataaca 3810203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 3986963 - 3987183
Alignment:
Q  25 aatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 124  Q
    ||||| ||| ||||||| |||||||| ||| |||||||||||||| || |||| | ||| ||||||  ||||||| ||| ||  ||||||||||  |  |    
T  3986963 aatatcactggacaacctatttggtgtatcaattttcacatcttcggccaatattttagtaaaaagggtttcttttaaagattctattccatgtaatttt 3987062  T
Q  125 aattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 224  Q
    || | |||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||   ||    
T  3987063 aacttttcactcacctttgccaaaaaacaacaaccatcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgccaatgccaggca 3987162  T
Q  225 taccccaaattccaataacac 245  Q
    |||||||||||||||| ||||    
T  3987163 taccccaaattccaatcacac 3987183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 4218619 - 4218831
Alignment:
Q  33 tagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttc 132  Q
    ||||||||||||||| |||||||||||||||||||||   ||||||  ||||||||||  ||||||| ||||||||||||||| | |||  |||| |       
T  4218619 tagacaacccatttgatgaatcgattttcacatcttcatttaataggttagaaaaaagcatttcttttaaaaatgttattccacgactttgtaatcccaa 4218718  T
Q  133 acttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaa 232  Q
    ||| || |||| || |||||||||||| ||||||||||| ||| |||| | ||| | |||||  ||||||||||||||||||||||| ||||||||||||    
T  4218719 actcacatttgacataaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaa 4218818  T
Q  233 attccaataacac 245  Q
    |||||||||||||    
T  4218819 attccaataacac 4218831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 3817657 - 3817772
Alignment:
Q  130 ttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccc 229  Q
    |||||| |||||| |||| ||||||||||| ||||| || || | ||||||  |||| |||||||| ||||||||||||||||||||||| ||||| |||    
T  3817657 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccc 3817756  T
Q  230 caaattccaataacac 245  Q
    ||||||||||||||||    
T  3817757 caaattccaataacac 3817772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 3919807 - 3919692
Alignment:
Q  130 ttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccc 229  Q
    |||||| |||||| |||| ||||||||||| ||||| || || | ||||||  |||| |||||||| ||||||||||||||||||||||| ||||| |||    
T  3919807 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccc 3919708  T
Q  230 caaattccaataacac 245  Q
    ||||||||||||||||    
T  3919707 caaattccaataacac 3919692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 3933031 - 3932916
Alignment:
Q  130 ttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccc 229  Q
    |||||| |||||| |||| ||||||||||| ||||| || || | ||||||  |||| |||||||| ||||||||||||||||||||||| ||||| |||    
T  3933031 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccc 3932932  T
Q  230 caaattccaataacac 245  Q
    ||||||||||||||||    
T  3932931 caaattccaataacac 3932916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 3963267 - 3963212
Alignment:
Q  190 ttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacac 245  Q
    |||||| ||||  ||||||||||||||||| |||||||||||||| |||| |||||    
T  3963267 ttcttctgcaagggttgtcttgccaataccacccataccccaaatcccaacaacac 3963212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 13397918 - 13398133
Alignment:
Q  25 aatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcct 124  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||| ||| |||||||| ||||| | ||||||||| ||||||    
T  13397918 aatataactaggcaacccatttgatgaatcgatttttacatcttctgctaatagtgtagaaacaagcttttcttttaaaaacgctattccatgccttcct 13398017  T
Q  125 aattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctccca 224  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13398018 aattcttcactcacctttgccaaaaaacaacatccttcatattcagaacaaatttgattaaaaatttcttcggcaatagttgtctttccaatacctccca 13398117  T
Q  225 taccccaaattccaat 240  Q
    |||||||||| |||||    
T  13398118 taccccaaataccaat 13398133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 1967 - 1911
Alignment:
Q  189 tttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacac 245  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  1967 tttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacac 1911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 7069135 - 7069186
Alignment:
Q  190 ttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaata 241  Q
    |||||| |||||||||||||| |||||||| | |||||||||||||||||||    
T  7069135 ttcttctgcaatagttgtctttccaataccactcataccccaaattccaata 7069186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 7075641 - 7075696
Alignment:
Q  190 ttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacac 245  Q
    |||||| ||||||||||| || |||||||||  ||||||||||||||||| |||||    
T  7075641 ttcttcagcaatagttgttttaccaatacctggcataccccaaattccaagaacac 7075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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