View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_10 (Length: 510)
Name: NF8548A_low_10
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 271 - 508
Target Start/End: Complemental strand, 40757604 - 40757367
Alignment:
| Q |
271 |
tatagagtatagatgtttgaaaattttaaattatataacaaactcaacaaacccatatgtattcaacatcataatcatattcatactctattgagttact |
370 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40757604 |
tatagaatatagatgtttgaaaattttaaattatataacaaactcaacaaacccatatgtattcaacatcataatcatattcatactctattgagttact |
40757505 |
T |
|
| Q |
371 |
tcaaattcacaccaactcattatcagtcttgttgtaaacacaaagggatctattttagaggtgtttgtttcacctaggaaaaataccaccggcttatatt |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40757504 |
tcaaattcacaccaactcattatcagtcttgttgtaaacacaaagggatctattttagaggtgtttgtttcacctaggaaaaataccaccggcttatatt |
40757405 |
T |
|
| Q |
471 |
atgtcacaagatctaggttctctcatttcaccttatat |
508 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40757404 |
atgtcacaagatccaggttctctcatttcaccttatat |
40757367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 40757843 - 40757692
Alignment:
| Q |
31 |
gggttcgtatgccttttgtcatgttaaatgtgcaaggacaatttctaagtagtttattctctatcataatagttacccaaaataaacaaaaacaatccac |
130 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40757843 |
gggttcctatgccttttgtcatgttaaatgtgtaaggaccatttctaagtagtttcttctgtatcataatagttatccaaaataaacaaaaacaatccac |
40757744 |
T |
|
| Q |
131 |
gatcaattcaccttataatatactagtcgaaagccagacactcatgtgtccg |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40757743 |
gatcaattcaccttataatatactagtcgaaagacagacactcatgtgtccg |
40757692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University