View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_104 (Length: 304)
Name: NF8548A_low_104
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_104 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 30049390 - 30049717
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcacggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30049390 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
30049489 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaag-tttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
199 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049490 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
30049589 |
T |
|
| Q |
200 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagc |
276 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30049590 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagc |
30049689 |
T |
|
| Q |
277 |
taagcataggctgagtcattacttagta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30049690 |
taagcataggctgagtcattacttagta |
30049717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 7162343 - 7162669
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcacggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
7162343 |
atggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaaaaaaggcacttgctagtgccaagttcatggagctaagaagcaa |
7162442 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaagttt-aaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
199 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162443 |
gctgggagtattccagaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
7162542 |
T |
|
| Q |
200 |
tgtgtaattattttaacttgttttgttagtaagattat-ctgcac---------------------aagttaagtaggtttatgtcatatgacatcagct |
277 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| | ||| |||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
7162543 |
tgtgtaatcattttaacttattttgttagtaaaactatgctgcacaagtaataaggttatctgcacaagttaagcaggtttatgtcatatgacatcagct |
7162642 |
T |
|
| Q |
278 |
aagcataggctgagtcattacttagta |
304 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
7162643 |
aagcataggctgagtcattactaagta |
7162669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 134 - 304
Target Start/End: Original strand, 30045121 - 30045314
Alignment:
| Q |
134 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt------- |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045121 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa |
30045220 |
T |
|
| Q |
227 |
------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagctaagcataggctgagtcattacttagta |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045221 |
ctatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagta |
30045314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 3945644 - 3945971
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcacggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3945644 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
3945743 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaag-tttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
199 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945744 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
3945843 |
T |
|
| Q |
200 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagc |
276 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3945844 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagc |
3945943 |
T |
|
| Q |
277 |
taagcataggctgagtcattacttagta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3945944 |
taagcataggctgagtcattacttagta |
3945971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 132 - 304
Target Start/End: Original strand, 3941377 - 3941572
Alignment:
| Q |
132 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt----- |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941377 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa |
3941476 |
T |
|
| Q |
227 |
--------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagctaagcataggctgagtcattacttagta |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941477 |
aactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagta |
3941572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 22365272 - 22365595
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcacggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22365272 |
atggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
22365371 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaagttt-aaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
199 |
Q |
| |
|
|||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365372 |
gctgggagtattccagataagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
22365471 |
T |
|
| Q |
200 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaag |
280 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22365472 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcataagtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcaactaag |
22365571 |
T |
|
| Q |
281 |
cataggctgagtcattacttagta |
304 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
22365572 |
cataggctgagtcattactaagta |
22365595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 134 - 304
Target Start/End: Original strand, 22361019 - 22361208
Alignment:
| Q |
134 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt------- |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361019 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaag |
22361118 |
T |
|
| Q |
227 |
------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagta |
304 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22361119 |
ctatgctgcacaagtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagta |
22361208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 23397404 - 23397337
Alignment:
| Q |
153 |
aaaacttttctgaatactttattgtttatgttactttattgctta--tgtgtgtaattattttaactt |
218 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
23397404 |
aaaacttttctgaatatttcgttgttaatgttactttattgcctatgtgtgtgtaatgattttaactt |
23397337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 39949786 - 39949465
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcacggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39949786 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
39949687 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaag-tttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
199 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39949686 |
gctgggagtattccagaaaagttttaaggaggagtgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatg |
39949587 |
T |
|
| Q |
200 |
tgtgtaattattttaacttgttttgttagtaagattat-ctgca----------------caagttaagtaggtttatgtcatatgacatcagctaagca |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39949586 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatatgacatcagctaaaca |
39949487 |
T |
|
| Q |
283 |
taggctgagtcattacttagta |
304 |
Q |
| |
|
|||||||||| |||||| |||| |
|
|
| T |
39949486 |
taggctgagttattactaagta |
39949465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 133 - 304
Target Start/End: Complemental strand, 39954045 - 39953857
Alignment:
| Q |
133 |
gtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaag |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954045 |
gtgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaa |
39953946 |
T |
|
| Q |
233 |
attat-ctgca----------------caagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagta |
304 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||| |
|
|
| T |
39953945 |
actatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatatgacatcagctaaacatagactgagttattactaagta |
39953857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 196625 - 196313
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcacggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
196625 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
196526 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaag-tttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
199 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
196525 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaa-----------ttatgttactttattgtttatg |
196437 |
T |
|
| Q |
200 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaag |
280 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
196436 |
tgtgtaatcattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcacgagttaagtaggtttacgtcatatgacatcagctaag |
196337 |
T |
|
| Q |
281 |
cataggctgagtcattacttagta |
304 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
196336 |
cataggctgagtcattactaagta |
196313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 304
Target Start/End: Complemental strand, 200872 - 200692
Alignment:
| Q |
132 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
200872 |
agtgttgactaattgacctataaaacttttctgaat-----------tatgttactttattgtttatgtgtgtaatcattttaacttgttttgttagtaa |
200784 |
T |
|
| Q |
232 |
ga-------------------ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagta |
304 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
200783 |
aactatgctgcacaagtaaggttatctgcacaagttaagtaggtttacctcatatgacatcagctaagcataggctgagtcattactaagta |
200692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 134 - 297
Target Start/End: Original strand, 1330569 - 1330751
Alignment:
| Q |
134 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga |
233 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
1330569 |
tgttgactaattgacctataaaacttgtctgaatactttattgtttatgttactctattgcttatgtgtgtaatcattttaacttgttttgttagtaaaa |
1330668 |
T |
|
| Q |
234 |
-------------------ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcatta |
297 |
Q |
| |
|
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| T |
1330669 |
ctatactgcacaagtaatgttatctgcacaagttaagtaggtttatgtcatatgacatcagcaaagtataggttgagtcatta |
1330751 |
T |
|
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