View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_105 (Length: 302)
Name: NF8548A_low_105
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_105 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 43611784 - 43612079
Alignment:
| Q |
1 |
aaataacaatgacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcctacatctgcgactatagagcagctgtagtcctgtattattacag |
100 |
Q |
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| T |
43611784 |
aaataacaatgacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcctacatctgcgactatagagcagctgtagtcctgtattattgcag |
43611883 |
T |
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| Q |
101 |
tgttacaattacaaacaatatatataagactacagtccagattacaacaatacccctgaaccgcaccgtctcactcactcagctcccctgccccttgccc |
200 |
Q |
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| T |
43611884 |
tgttacaattacaaaccatatatataagactacggtccagattacaacaatacccctgaatcgcaccgtctcactcactcagctcccctgccccttgccc |
43611983 |
T |
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| Q |
201 |
tattatatgcttatgagccatactgaacatatcagtactaatgttgaacaaagtgttggttgtttgaaatgaatataggaaattgatagtacttac |
296 |
Q |
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| T |
43611984 |
tattatatgcttatgagccatactgaacatatcagtactaatgttgaataaagtgttggttgtttgaaatgaatataggaaattgatagtacttac |
43612079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 34940234 - 34940182
Alignment:
| Q |
109 |
ttacaaacaatatatataagactacagtccagattacaacaatacccctgaac |
161 |
Q |
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| T |
34940234 |
ttacaagccatatatatagtactacggtccagattagaacaatacccctgaac |
34940182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 27407245 - 27407329
Alignment:
| Q |
11 |
gacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcctacatctgcgactatagagcagctgtagtcctgtattattac |
98 |
Q |
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| T |
27407245 |
gacaataaacacaattatttgattacacaatttggccaagtgt---tacatctgcgactgtagagaagctatagtcctgtattattac |
27407329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 32349735 - 32349776
Alignment:
| Q |
118 |
atatatataagactacagtccagattacaacaatacccctga |
159 |
Q |
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| T |
32349735 |
atatatataatactacggtccagattacaacaatgcccctga |
32349776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 24491 - 24459
Alignment:
| Q |
53 |
tgcctacatctgcgactatagagcagctgtagt |
85 |
Q |
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| T |
24491 |
tgcctacctctgcgactatagagcagctgtagt |
24459 |
T |
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