View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_11 (Length: 485)
Name: NF8548A_low_11
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 66 - 321
Target Start/End: Original strand, 21228591 - 21228846
Alignment:
| Q |
66 |
ttacatgtccaaacacaaacctctctatgtttgtttgtttatatatcaaacatctattgttaaaatcaagtaatctgataaagtattatatagtaattga |
165 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21228591 |
ttacttgtccaaacacaaacctcactatgtttgtttgtttatatatcaaacatctatagttaaaatcaagtaatctgataaagtattatatagtaattga |
21228690 |
T |
|
| Q |
166 |
tttgaatggaatattgtaaacttgaaacaccttataagaactttcaaaatggatggttggattgtttagttttgcattctacaaaatattattcagtggt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21228691 |
tttgaatggaatattgtaaacttgaaacaccttataagaactttcaaaatggatggatggattgtttagttttgcattctacaaaatattattcagtggt |
21228790 |
T |
|
| Q |
266 |
gtaatgtaaaagtttgtctcaagagtcaattagctgggtcatattgttgcgctatt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21228791 |
gtaatgtaaaagtttgtctcaagagtcaattagctgggtcatattgttgtgctatt |
21228846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 322 - 434
Target Start/End: Complemental strand, 7884190 - 7884074
Alignment:
| Q |
322 |
attgtgaagaagacaacaattt----tgtatatgatgaaccaattgacggaaagacgaagcactgacatgaggcagatgtcaatggcattgtttctagtc |
417 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||||||||| | ||||||||| ||||| |||||| |||||| ||||||||||| |||||| |
|
|
| T |
7884190 |
attgtgaagaaaacaacaatttatcttgtctatgatgaaccaattgaggaaaagacgaaccactgccatgagccagatgagaatggcattgtgtctagtg |
7884091 |
T |
|
| Q |
418 |
gtgatgaaaatgtaagt |
434 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7884090 |
gtgatgaaaatgtaagt |
7884074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 21228523 - 21228566
Alignment:
| Q |
24 |
ggaatgagctgcgatgtcaccaacattcttacagaaaatatttt |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21228523 |
ggaatgagctgcgatgtcaccaacattcttacagaaaatatttt |
21228566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 438
Target Start/End: Original strand, 10035872 - 10035991
Alignment:
| Q |
323 |
ttgtgaagaagacaacaattt----tgtatatgatgaaccaattgacggaaagacgaagcactgacatgaggc-agatgtcaatggcattgtttctagtc |
417 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| |||||| | ||||| |||||||| |||||| | ||||| ||||||||||| ||| || |
|
|
| T |
10035872 |
ttgtgaagatgacaacaatttatcttgtatatgatgaacaaattgatgaaaagatgaagcacttccatgagcctagatgagaatggcattgtctct-gtg |
10035970 |
T |
|
| Q |
418 |
gtgatgaaaatgtaagtaata |
438 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10035971 |
gtgatgaaaatgtaagtaata |
10035991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 10035699 - 10035758
Alignment:
| Q |
222 |
ttggattgtttagttttgcattctacaaaatattattcagtggtgtaatgtaaaagtttg |
281 |
Q |
| |
|
|||||||| || | |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
10035699 |
ttggattggttcggtttgcattctacaatttattattcgctggtgtaatgtaaaagtttg |
10035758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University